Xperia T menu icons touch problem after Jelly Bean upgrade

I have Xperia T upgraded to jelly bean 4.1.2 Build Number 9.1.A.0.489 kernel version 3.4.0-g5b052b2-00759-gd9ee069 - Mon Jan 14 15:29:55 2013
After tap my menu icons in jelly bean there is no action. ex. Settings, Messages icon tap.
After switch on developer options -> show layout bounds - it's shown that icons (blue square) are covering the touch area (pink square) and not pushing touch events to action areas, only bouncing but without action. When touching both blue and pink area with finger icons works fine, with touching only blue areas no action. Every other touch are ok.
Is it common issue ?
Thanks.

I think this only happens when you enable that under development options. Have you tried to turn that off and check if this still remains?
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