Xserve raid midplane(?) troubleshooting help

Hi,
I just inherited an XServe RAID with 12 180GB drives. My question is thus:
If I put the single RAID controller in the top slot, It recognizes all drives on the left side of the RAID, which is expected
If I put the single RAID controller in the bottom slot, it does not recognize any drives in any slots even if I swap those drives from the left side to the right (to rule out 5 bad drives.
I have two empty sleds that are on the right side of the RAID as well.
I am guessing, having never owned one before, that this is likely a problem with the midplane. Is there a way to troubleshoot the midplane? I very quick inspection, didn't reveal anything that was obvious. I plan on doing a more thorough inspection over the weekend.
I am also making the assumption that I do not have to have a controller in the top slot for the bottom controller to work since the top controller works without having a controller in the bottom slot.
Any help/insight would be appreciated

LIttle Update in case it would help someone with more knowledge of this than I:
When the Controller is in the lower position:
or
which I find interesting since I don't have an upper controller installed and the cooling modules both show as missing even though they exist (though 1 is failed).
If I look at the other tabs:
Info: Shows only Name: XServe RAID and Power State: On
Arrays & Drives: Shows Not Installed for all drives on that side of the XServe RAID
Fibre Channel is blank as I don't currently have it connected to my XServe
Events shows nothing of significance to me other than all disks online
When the controller is in the upper position however:
I am curious as to why the RAID controller shows as present in both slots when it clearly is not however.
Hoping it was just a cable from the midplane to the unit, I swapped cables this morning hoping for a failure, but did not get such failure, so I have ruled out the cable. The Controller seems to work when it is in the top slot, so I think that the controller is likely good as well. So I guess I can sum it up as:
Power supplies: Good x2, shows a green light in either slot, swapped in testing
Batteries: Good x2; Swapped in testing, Swapped in testing, works in upper slot, does not in lower slot
Cooling Unit: Good x2; Swapped in testing, works in upper slot, does not in lower slot
Controller: Good x1; works in upper slot, does not work in lower slot
Which leads me back to the midplane as there isn't much else inside this unit that I can see that could go wrong. Does this sound like an accurate assessment? I ask because I want to be confident I have found the issue prior to ordering a new backplane.
Once again, thanks in advance for any information.

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