XServe slows down processing when not Controlling with 3.2.2

I'm running an application to transfer a database into a MySQL database in an XServe. Will take about 8 hours or so and there's a visual incrementer.
XServe has 3.2.2 Client and I'm 3.2.2 Admin and it seems to start this when I upgraded. This is the first I've ever seen. When I'm controlling the XServe the incrementer is flying at around 2000 records every 15 seconds or so. When I stop controlling and then come back the incrementer hasn't done anything and then starts going again. Basically it seems to stop as soon as I disconnect from the XServe and then starts back up when I connect again.
My work around is I just leave my ARD 3.2.2 connected and controlling the whole time so the xServe finishes.
Is there a new setting to stop processing as soon as ARD disconnects?
Thanks
Dana

It's not just Safari either. Excel also exhibits this issue when using the trackpad gestures. Here's a screenshot:
http://home.comcast.net/~volfreak/pictures/10.5.6Rendering_Issues/Excel_12Image1.jpg
Notice the area inside the blue box. There is the "Spent" column that's repeated and other cells are shifted right (very apparent in the "Total Spent, Total Allocated, Balance" cells.

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