Y10.10.2 S4.0 freeze, then random users created

Fresh install Yosemite 10.10.2 2 Users Adminx2 User x1
Server 4 - Setup and running FileSharing, ProfileManager, TimeMachine, NetInstall, OpenDirectory, SoftwareUpdates.
DeployStudio - Repository mapped to NAS
OpenDirectory - Newly Created 2 Users.
GlobalSAN iSCSI link with redirected home directories.
Tested OpenDirectory Login on client Machine with home drive mapped - working logged out. Shutdown Client Machine.
Went back to Xserve Machine. Tried to log into Server App/ Manage enter credentials and then waiting no page displays.
Shutdown to restart -
Serveradmin stop timemachine ....
Disconnect iSCSI map
Then Restart (Mac Mini i5 8gb ram 1tb HDD  brand new)
Upon Restart:
Logged into server and 349 Local Users in the user list.
ie Netboot100 - Netboot149 Sharedfile groups as users Sharedfilenames as user. configuration filenames as users.
Now unable to use OpenDirectory, and phantom users are still present undeletable and "!" users
Destroyed the OD Db re added no joy.
This is the 2nd time this has happened on a 2nd server. (first time happened when we had 5/10 HDD's fail on our NAS which was OD Master.
(ALL other OD/AD Masters are turned off and disabled on the network.))
I am Building a new network for a school.
Xserve to handle the the 540 student logins and homedrives mapped on a iSCSI LUN to a Synology RS3412 30Tb raid 10. Functioning 100% fine.
Any advise on how to clear all local users on the server app or how to flush the server app of all data to start fresh would be great.
Kind Regards
Paul Trevathan.
ICT Remarkables Primary School.

Many Open Directory problems can be resolved by taking the following steps. Test after each one, and back up all data before making any changes.
1. The OD master must have a static IP address on the local network, not a dynamic address. It must not be connected to the same network with more than one interface; e.g., Ethernet and Wi-Fi.
2. You must have a working DNS service, and the server's hostname must match its fully-qualified domain name. To confirm, select the server by name in the sidebar of the Server application window, then select the Overview tab. Click the Edit button on the Host Name line. On the Accessing your Server sheet, Domain Name should be selected. Change the Host Name, if necessary. The server must have at least a three-level name (e.g. "server.yourdomain.com"), and the name must not be in the ".local" top-level domain, which is reserved for Bonjour.
3. The primary DNS server used by the server must be itself, unless you're using another server for internal DNS. The only DNS server set on the clients should be the internal one, which they should get from DHCP if applicable.
4. Only if you're still running Mavericks server, follow these instructions to rebuild the Kerberos configuration on the server.
5. If you use authenticated binding, check the validity of the master's certificate. The common name must match the hostname and domain name. Deselecting and then reselecting the certificate in Server.app has been reported to have an effect in some cases. Otherwise delete all certificates and create new ones.
6. Unbind and then rebind the clients in the Users & Groups preference pane. Use the fully-qualified domain name of the master.
7. Reboot the master and the clients.
8. Don't log in to the server with a network user's account.
9. Disable any internal firewalls in use, including third-party "security" software.
10. If you've created any replica servers, delete them.
11. If OD has only recently stopped working when it was working before, you may be able to restore it from the automatic backup in /var/db/backups, or from a Time Machine snapshot of that backup.
12. As a last resort, export all OD users. In the Open Directory pane of Server, delete the OD server. Then recreate it and import the users. Ensure that the UID's are in the 1001+ range.
If you get this far without solving the problem, then you'll need to examine the logs in the Open Directory section of the log list in the Server app, and also the system log on the clients.

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