Yosemite Preview Highlighting Problems

I use Preview all the time for school. It has been working fine on my iMac, but on my MacBook Air I've been having problems since the semester started up again on Monday.
I cannot use the right click menu inside of a PDF document to highlight material on the MBA. On my iMac, this works fine in the same PDF file (Synced via Dropbox). If I select the highlight tool from the menubar, I can highlight text, but when I click on the highlighted text, I cannot change the color of the text using the right-click menu.
I've tried restarting, clearing the com.apple.Preview files, logging in to safe mode, and creating a new user and the problem persists. Any ideas of what else I could try?

I have the same problem in my MacBook Pro(Mid2012), after  update 10.10.2 beta 2. Right click in Preview cannot highlight PDF, while highlight using tool bar works well. This problem prevent me from using Preview in my MacBook.
Another problem is that, after updated to Yosemite. Text inserted to pdf is not well organized. It seems that the display border of text have been changed in Preview (Yosemite). This bugs made my previous annotated pdf files look ugly, even if they are annotated by Preview (mavericks). Interestingly, these files are displayed correctly in  Goodreader, PDF Expert 5, and Dropbox.

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