Best Practice for CTS_Project use in a Non-ChARM ECC6.0 System

We are on ECC6.0 and do not leverage Solution Manager to any extent.  Over the years we have performed multiple technical upgrades but in many ways we are running our ECC6.0 solution using the same tools and approaches as we did back in R/3 3.1. 
The future vision for us is to utilize CHARM to manage our ITIL-centric change process but we have to walk before we can run and are not yet ready to make that leap.  Currently we are just beginning to leverage CTS_Projects in ECC as a grouping tool for transports but are still heavily tied to Excel-based "implementation plans".  We would appreciate references or advice on best practices to follow with respect to the creation and use of the CTS_Projects in ECC.
Some specific questions: 
#1 Is there merit in creating new CTS Projects for support activities each year?  For example, we classify our support system changes as "Normal", "Emergency", and "Standard".  These correspond to changes deployed on a periodic schedule, priority one changes deployed as soon as they are ready, and changes that are deemed to be "pre-approved" as they are low risk. Is there a benefit to create a new CTS_Project each year e.g. "2012 Emergencies", "2013 Emergencies" etc. or should we just create a CTS_Project "Emergencies" which stays open forever and then use the export time stamp as a selection criteria when we want to see what was moved in which year?
#2 We experienced significant system performance issues on export when we left the project intersections check on.  There are many OSS notes about performance of this tool but in the end we opted to turn off this check.  Does anyone use this functionality?  Any reocmmendations?
Any other advice would be greatly appreciated.

Hi,
I created a project (JDeveloper) with local xsd-files and tried to delete and recreate them in the structure pane with references to a version on the application server. After reopening the project I deployed it successfully to the bpel server. The process is working fine, but in the structure pane there is no information about any of the xsds anymore and the payload in the variables there is an exception (problem building schema).
How does bpel know where to look for the xsd-files and how does the mapping still work?
This cannot be the way to do it correctly. Do I have a chance to rework an existing project or do I have to rebuild it from scratch in order to have all the references right?
Thanks for any clue.
Bette

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