Best way to copy ALL DATA from song to song?

Hello everyone,
I'm in the middle of scoring a film and have ran into what seems to be a corrupted song, and want to attempt to transfer all data from this song into a new file.
I'm running multiple global tracks with changes in tempos and time sigs all over, multiple audio tracks, and various Virtual instruments. I also have an extensive environment in which I use instrument tracks to access my exs instruments, as well as multi-instrument tracks for kontakt 2. Of course I have this saved as a template, but as you know as projects progress, the current song rarely looks like your autoload. So simply copying and pasting will not work, as I have many new instruments and audio files in different places in my arrange page. Thus when I try to copy and paste, logic sees that the current tracks are not "correct" and asks to "create new instruments" which seems to randomly throw all the instruments to the bottom of my arrange page, making it all out of whack!
With some help from the audio config window and some manual editing of the arrange page, I was able to get my song pretty much back to normal, but for future reference, what is the best way to transfer all of my data to another song, while still keeping the look and functionality of the song intact?
Thanks in advance for your help! If it helps to see what I'm talking about, I'm willing to post my song file for reference, just ask.

I'd LOVE to somehow avoid #4 if possible. As I stated
above, my projects always change from the templates
due to extra audio tracks, audio instruments, etc, so
a simple "copy and paste" does not seem to work.
Is there something I'm missing?
Yup, I was missing something really simple. If you choose NOT to copy instruments, it will ask you to keep the instrument or create a new track. If you keep the instrument (since my instruments names remained the same as the template) logic will connect the tracks with the instruments and only put the additional tracks (i.e. extra audio tracks etc) on the bottom. WAY COOL!
Now my process is a little easier, however if you have any other tips so share please feel free to post.

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