External Hard Drive Causing Force quit not to work

I have 2 Lacie 500 gig FW 800 external drives daisy chained to my imac. I use one for Time Machine and one for weekly backups. After upgrading to 10.5.3 I noticed applications were freezing and I could not force quit. Today Microsoft Word froze and I noticed when I went to force quit, (holding the mouse button down on the icon to get menu) that one of my drives spun up. I disconnected the FW800 cable from my Mac and the application unfroze. Help are my drive incompatible now in 10.5.3? Is something wrong with one of my drives?

Try running repair permissions in Disk Utility on your hard drives.

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