FCP 7 Renamed Video's in a sequence to the audio name by its self. Why?

Hey Guys.
So I'm assisting on a big project in fcp7 for the first time in ages. We have created a sequence for every slate of the video. The video and audio have different names. We had to work quickly so we didn't rename stuff, we just starting syncing by timecode, but that was out, so we still did it manually by eye and ear.
When we finished the sync we thought it wouldn't hurt to link all the clips with cmd+L. But for some reason now we've come back to our sequence, all the video layers have adopted the same name as the audio clips, and also match frame no longer works.
I'm baffled to what the answer could be to turn them back. I've included and example of what's going on below.
Original when syncing.
(VIDEO) B0137-8JK
(AUDIO) 104T.WAV
After FCP 7 did something weird.
(VIDEO) 104T.WAV
(AUDIO) 104T.WAV
If any one could help that'd be awesome.
Thanks,
Gary

hi NLEdit,
i'm doing them as separate files (mostly) because the majority of the clips come from their own individual scenes/soundscapes within a lengthy documentary, which means the audio (noise reduction, some effects) need to be be tailor-made to suit the video filmed in any/many given circumstances (inside/outside, different background noises, gains, different EQ needed, etc).
does that answer your question? were you thinking of the lift/stamp tool and apple scripts? if not, please enlighten me.
thanks,
marc
p.s. still can't save basic tweaked audio from a QT without the new file's audio becoming silent....

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