Help with program structure - simple question.

Hi. I need a piece of advice on how to create the correct structure for my program. It consist on two main processes:
1)Detecting time difference between 2 rising edges, and showing the data. I used the concept of another user "panoramarts" that you can see here:
http://forums.ni.com/t5/Digital-I-O/Measuring-Time​-between-two-Digital-Signals/m-p/2091868#M16230
(If anyone knows a better way to do it I will really appreciate it)
2) A continuous process.
I attached a picture of the structure I am using. The numbers I will refer to, are indicated there.
The program basically starts counting the time until a rising edge is detected (number 2 in the picture). After that the next sequence is executed (number 3 in the picture) counting the time again until the next edge is detected. After that the subtraction is made to have the time difference and then displayed (number 4 in the picture).
Here is the problem: I have a continuous process that must be executed, so if I place it in "Number 1" then the edge detection must be running otherwise i do not see the continuous process (is like Labview execute de FLAT sequence, and after that the continuous process). If a place the continuous process in another While loop, then is like sometimes I get inaccurate data from the edge detection.
How can I solve that? Is there another way to acquire time between edges? I hope you can help me without the VI.
I am using Arduino, so I can not use DAQmx VI's.
DMDsync
Attachments:
program structure.jpg ‏54 KB

Thanks for the quick feedback!
I believe my problem is that I am not using the best way to estimate time between edges. As I previously said, I am using almost the exact VI that "Panoramarts" shared in this link:
http://forums.ni.com/t5/Digital-I-O/Measuring-Time​-between-two-Digital-Signals/m-p/2091868#M16230
The only difference is that instead of a DAQ assistant in each of the While Loops, I use the same input for both of them. It works ok. It measure the time difference between the 1st and 2nd edges, the 3rd and 4th, and so on. All that VI is inside a while loop to continuously perform the counting. May be I can simplify my question:
How can I continuously measure time difference between incoming edges (it could be a Boolean variable varying from true to false periodically) in a VI that already has a continuous process running?
As Altenbach said, I used a wait statement in the continuous process (as it is not necessary a fast data update for it, because it is just a simple temperature measurement), but that delay created some faulty timing in the edge timing sequence.
Any ideas?
Thanks again!
DMDsync

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    Rescue email address and how to reset Apple ID security questions
    http://support.apple.com/kb/HT5312
    Apple ID: All about Apple ID security questions
    http://support.apple.com/kb/HT5665
    If you continue to have issues, please contact our Account Security Team as outlined in this article for assistance with resetting the security questions:
    Apple ID: Contacting Apple for help with Apple ID account security
    http://support.apple.com/kb/HT5699
    Thank you for using Apple Support Communities.
    Best,
    Sheila M.

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