I seem to have both Java 6 and Java 7. Impossible?

I'm trying to disable, possibly remove, Java to prevent the exploits recently disclosed.
Following instructions on various sites, I'm trying to figure out which version I have installed. Supposedly 1.6 is safe from the recent expliots, and 1.7 is vulnerable.
In Terminal, I type:
java -version
and I get:
java version "1.6.0_41"
Java(TM) SE Runtime Environment (build 1.6.0_41-b02-445-11M4107)
Java HotSpot(TM) 64-Bit Server VM (build 20.14-b01-445, mixed mode)
This seems to suggest I have 1.6, right?
But when I go to System Preferences and click the Java pane, a new window opens and it tells me:
Your current version is Java 7 update 9. It is recommended that you update now to keep your system secure.
So which is it? Why the contradiction?
I'm running Lion 10.7.5.
Thanks, in advance, for your help!

The difference is the java coming from
the JavaVM.framework (The JDK, needed for development)
the Java Internet plugins (The JRE, needed for running applets / webstart)
The JDK version (linked in /usr/bin , the one you are executing in the terminal)
/System/Library/Frameworks/JavaVM.framework/Versions/Current/Commands/java -version
java version "1.6.0_41"
Java(TM) SE Runtime Environment (build 1.6.0_41-b02-445-11M4107)
Java HotSpot(TM) 64-Bit Server VM (build 20.14-b01-445, mixed mode)
The Java Plugin (JRE) - the one you are seeing in the system preferences.
/Library/Internet\ Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/bin/java -version
java version "1.7.0_15"
Java(TM) SE Runtime Environment (build 1.7.0_15-b03)
Java HotSpot(TM) 64-Bit Server VM (build 23.7-b01, mixed mode)

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