If I delete my iTunes and re-install will it tell me that I am logged on to more than one iTunes?

My iTunes is telling me that i am logged on to more than one iTunes with my ipod, so if i just delete iTunes on my computer will it still telll me that i am logged onto more than one iTunes account? And if i do delete it will all of my apps be deleted off my iPod? I don't really mind if all of my music/videos/etc. get deleted just not my apps.

Ideally would would have a backup of the library that you previously managed the device with. It's not so much the deleting of the apps, you can download those again, but the loss of any data associated with them.
You should be able to:
Backup the device to the new installation
Transfer your purchases into a newly authorized library
Recover any other media using third party tools as suggested in this post from forum regular Zevoneer
Restore the device from the backup
This process should switch the association of the device to the new library, preserving the data and settings in your apps.
May also be prudent to attempt a backup to iCloud directly from the device before you start... Settings > iCloud > Storage & Backup > iCloud Backup > On. It won't save any media but it would preserve the general account settings and documents in case anything goes wrong while you are trying to extract your other data.
When you get it all fixed, make a backup!
tt2

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