ITunes doesn't sync iPad, because apps can not be determined - how do I fix this?

For the past day I when I try to sync my iPad, I get the message:
iTunes cannot sync apps to the iPad, because the apps installed on the iPad could not be determined.
How do I fix this?

Have you moved, renamed or deleted the original files?
Has another programme on your computer moved, renamed or deleted the files?
Have you just created this iTunes Library?
Have you recently added the missing music music from an external hard drive?
If it's none of the above, what have you been doing recently? For example, have you been "sorting" your files in your file manager?

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