Menu bar in Yosemite appears on both monitors

Mac Pro  w/ Yosemite and dual monitor display
The menu bar at the top of the screen appears on BOTH monitors ALL the time. However, the one on the secondary monitor is dimmed out, and can be two or three app switches behind. For example, awhile ago I worked in Illustrator, and the Illustrator menu bar is visible in the second monitor (but dimmed). On the main monitor I have been in several apps since, but currently it is showing Firefox. If I mouse click on that dimmed out menu it will go right to Illustrator - and the Illustrator menu will appear on BOTH monitors. It will remain this way until switching to another app which has palettes on the second monitor, so just now I went to InDesign, and now that menu bar is visible. Also visible are the usual items in the right part of the menu, such as the time.
Finally, but I think related. When in Adobe apps, with all the palettes located in the second monitor, when I click on something which should pop up more choices (anything in the character palette) - sometimes the pop-up will appear all the way across both screens, and on the main monitor. That is a ridiculous pain.
Other than that the system seems stable, and the apps do work. I did go back down to one desktop in spaces, but that seems to make no difference. Ideas ???
Thanks, C

Can you explain the problem better?
So, you select a Menu, scroll down to an item that has a submenu and you click on it? Clicking isn’t necessary but anyway, what happens next?
If I select a menu item, then hover over a submenu’d item, the submenu pops out to the side and I select an item from that menu. What does yours do?

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