Perl on quad core MacPro - 32 bit or 64 bit?

I am trying to run a perl script on a very giant file. I know I am insane to do so, but the code was given to me and it is easier than re-writing it. This is a scientific research project.
The problem is that I run out of memory. I think it is happening because perl is a 32-bit application, because I have 6 GB of RAM on the a new quad-core MacPro, and I have been seeing plenty of free memory as this thing runs over several days.
How can I tell if perl is a 32-bit app? If it is, does anyone know if there is a 64-bit version or if I can compile one? I have only seen instructions for 64-bit PPC versions, but I am willing to try those on my Intel machine if I can verify that it will work out to 64-bit.
For what it is worth, I have already run file on some of the perl libraries, and here is what I found:
macpro> file /System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE/libperl.dylib
/System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE/libperl.dylib: Mach-O universal binary with 2 architectures
/System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE/libperl.dylib (for architecture i386): Mach-O dynamically linked shared library i386
/System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE/libperl.dylib (for architecture ppc): Mach-O dynamically linked shared library ppc
So it is i386, which I assume is 32-bit?
Thanks,
Clay
Too many to list Mac OS X (10.4.9)
Too many to list   Mac OS X (10.4.6)  

The file is being read line by line and entered into a hash, and old entries purged after a while. However, due to the nature of the script, many things remain in the hash, causing lots of memory usage growth.
The errors I received were malloc failing somewhere in the perl library. I was monitoring the memory usage, and at some point hit a bug in the Activity Monitor was it was showing that I was using 16,000,000 TB (yes, terabytes) of real memory. I kept a screenshot of this to show off my cool super-mac to my friends.
I solved this my backing up the Mac OS and installing 64-bit Ubuntu linux on the machine. Not at all optimal, but the best I could see to do until 10.5 comes out. Hopefully, this will be done running by then. Last time, it took 11 days for one trace, and I have 6!
Thanks for the answers.

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