Problems with permissions in Acrobat 9.1

I´m having problems with the edition permissions in acrobat 9.1 pro extended.
I´m trying to stamp a FDF with corrects values into a PDF with security and changes allowed to fill in forms.
the problem is this:
I choose a permission password and a level of changes allowed.
Then save and close. And my aplication to stamp the FDF doesn´t work.
But, if I open again the PDF and MODIFY the "changes allowed" to any level of them, It seems to doesn´t matter any of them while I modify it. Then save and close again... and... Magic! the stamp works.
I´m looking for an reason for this all the day. But I don´t find any explanation. I suppose that acrobat would make some changes each time the rectrictions are modified... but I´m not sure.
Does anybody know why could be happening this or what does acrobat exactly?
Thanks a lot if someone can help me.
and sorry for my bad english ^^

Hello and thax for responding.
No, that was one of the first things we tried.
My helpful guy in the store went into Terminal and tried to figure out why all the files were tied to Administrator and needed Root password to move or delete.
Even the folder that he created via Terminal (he added a folder just to see what happended) got the + mark after it and was there by not able to move or add files into, without admin password.
I also used the 10.6 startup DVD to go in and try to reset the ACL for my internal SSD drive, but that did not seem to help either.
There is something about these files and disk that is not giving my Macbook permissions to change the info.
Can also maybe be good to know that before the disk crashed, I managed to use time maschine to back it up. I hooked up the disk to my computer, added another backup disk and backed up my Internal MacBook drive together with the (about to) crashing disk. Then I copied the info from this time machine disk on to the New Drive.
What I believe I need is to re-write the permissions on the disk so that not only admin are allowed to change the info but I have no idea how to do that.
Hope this gives you a little more of a clue what´s is going on and that you have an idea how to solve it.
Thanx

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