Raw photos corrupted by iPod

On a recent trip to South Africa, I downloaded my photos from my Sony Alpha 100 camera to my Ipod as I was informed it was possible to do, and on my initial attempts it worked without problems.
However, after downloading my 800 photos from my Ipod to my MacBook Pro (I am currently using Apple Aperture trial version), it had corrupted all bar about 10%, and now all have deteriorated beyond recognition.
Can anybody help me as to how I may recover these photos or what I can do to prevent it happening in future.

It's an SL1 but as the photos import fine into other photo apps I don't believe it's the camera. It (and all of my Canon cameras imported fine prior to the last raw update)

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