We need to reinstall the JAVA part alone in ABAP+JAVA

Dear Sir/Madam,
We have an SAP ECC 6.0 system with ABAP+JAVA components. Now there are some issue with our Java comp. and I'm unable to start the JAVA engine. As we have done little configuration on JAVA side we are planning to reinstall the JAVA part alone.
1)Can we uninstall the the JAVA Component alone from the ABAP+JAVA Central instance?(Without affecting the ABAP Part)
2)Can we install a new JAVA addin in our existing ABAP+JAVA system?
3)If yes; is there any special steps appart from the master guide "4.4.2 Installing the Java Add-In for an Existing ABAP System" ?
Thank you,
Siju

Thank you for the update,
We have done a Homogeneous system copy from our DEV system to QA system(SAP ECC 6.0 ABAP+JAVA with Oracle 10g)
Our issue is we are unable to connect the VA it shows "Unable to lookup connection default".
We've noticed that the Instance ID in our config tool still shows the DEV Instance ID and the Instance.properties files shows the QA system instance ID.
In our DEV it's given
com.sap.engine.bootstrap.Bootstrap
./bootstrap
ID0035522
and QA it's
ID0031354
In have changed the SID,HOST NAME and Instance ID in the config tool to the QA system param. as per the suggestions in the below link
Re: J2EE info status unavailable after system refresh
but still I am unable to connect the VA.
the log JVM_bootstrap.out is given below
Bootstrap MODE:
<INSTANCE GLOBALS>
determined by parameter [ID0031354].
Exception occurred:
com.sap.engine.frame.core.configuration.NameNotFoundException: A configuration with the path "cluster_data/dispatcher/ID3135400" does not exist.
     at com.sap.engine.core.configuration.impl.ConfigurationDataCacheAllImpl.getSubConfiguration(ConfigurationDataCacheAllImpl.java:107)
     at com.sap.engine.core.configuration.impl.ReadAccessConfiguration.getSubConfiguration(ReadAccessConfiguration.java:715)
     at com.sap.engine.bootstrap.Synchronizer.getConfiguration(Synchronizer.java:426)
     at com.sap.engine.bootstrap.Synchronizer.getElementType(Synchronizer.java:72)
     at com.sap.engine.bootstrap.Bootstrap.initDatabaseConnection(Bootstrap.java:420)
     at com.sap.engine.bootstrap.Bootstrap.<init>(Bootstrap.java:144)
     at com.sap.engine.bootstrap.Bootstrap.main(Bootstrap.java:814)
     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
     at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
     at java.lang.reflect.Method.invoke(Method.java:324)
     at com.sap.engine.offline.OfflineToolStart.main(OfflineToolStart.java:81)
Exception occurred:
com.sap.engine.bootstrap.SynchronizationException: Database initialization failed! Check database properties!
     at com.sap.engine.bootstrap.Bootstrap.initDatabaseConnection(Bootstrap.java:422)
     at com.sap.engine.bootstrap.Bootstrap.<init>(Bootstrap.java:144)
     at com.sap.engine.bootstrap.Bootstrap.main(Bootstrap.java:814)
     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
     at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
     at java.lang.reflect.Method.invoke(Method.java:324)
     at com.sap.engine.offline.OfflineToolStart.main(OfflineToolStart.java:81)
==[ Caused by: ]==----
com.sap.engine.bootstrap.SynchronizationException: No such Dialog Instance (ID3135400) in the database! Check database consistency or local Bootstrap properties!
     at com.sap.engine.bootstrap.Synchronizer.getElementType(Synchronizer.java:75)
     at com.sap.engine.bootstrap.Bootstrap.initDatabaseConnection(Bootstrap.java:420)
     at com.sap.engine.bootstrap.Bootstrap.<init>(Bootstrap.java:144)
     at com.sap.engine.bootstrap.Bootstrap.main(Bootstrap.java:814)
     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
     at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
     at java.lang.reflect.Method.invoke(Method.java:324)
     at com.sap.engine.offline.OfflineToolStart.main(OfflineToolStart.java:81)
[Bootstrap module]> Problem occurred while performing synchronization.
Please let me know how to resolve this isse.
Thank you,
Siju
Edited by: Siju Sam on Jul 7, 2009 7:21 AM

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