Why does iTunes delete all my music and then re-download (not all of) it when I sync?

So, I plugged my phone into my PC, and it loaded on the iTunes screen. I then went into the device and removed a couple of playlists from the phone (it had run out of space). When I then hit sync, rather than just removing the playlists and syncing to update anything that needed updated, it bloody well deleted ALL my music and then started downloading it again. We are talking about around 30-50GB of music. Not only this, but it appears to NOT download all the tracks on my playlists so I'm left with half the music I should have.
I have had this happen before and last time it totally screwed up my phone leaving me with the only option of completely reinstalling iOS7. Has anyone else had this happen? Is it fixable?  Not only this, but I am aware of "manage music manually" but have no idea where it is or how to activate it. I'm just bloody sick of apple! Why can't they get their **** together and fix these little bugs. I love their hardware but they clearly have too many ego driven tossers programming their software who don't think fixing issues is their problem!
Any help would be most appreciated as it's driving me up the bloody wall! PLEASE PLEASE PLEASE HELP!

I'm not sure why this happens, but I found a workaround. Below the album title it will list the artist(s). The issue seems to happen when there are multiple artists. For example, an Album titled "Over the Sea to Skye" has The Chieftains and James Galway as artists. Some tracks (for whatever reason) will list only one of these and result in the playlist showing what appears to be multiple albums. You can click on the artists and it will highlight. Paste in what is appearing on the other "albums" and it will then show as one:
Hope that is somewhat clear enough to help. Doesn't fix whatever the issue is but it is a workaround. For me this is only happening with CD's that I have imported.

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