WP8 IsolatedStorageFile Filenames Starting with Dot (".") not Removed on Uninstall?

In short, I observe when uninstalling my Windows Phone 8.1 development application, not all of its IsolatedStorageFile is being removed. Files and directories whose names start with '.' seem to be skipped.
Using ISETool.exe , I (accidentally) copied lots of files into the IsolatedStorageFile of an application on my phone that I'm developing. I didn't want most of those files and wanted to delete them, so I uninstalled my application. I even restarted
my phone (several tries later) to be safe.
Then, I re-installed my application, but didn't open the application and didn't put any files back onto my phone using ISETool. When I did `ISETool.exe ts...` to copy files back (expecting that there would be no files to copy from my phone, because
I'd just uninstalled my application), I found that there were a bunch of files that were copied from my phone. Each file that I noticed had a name starting with '.' , and each directory that I noticed either had a name starting with '.' or contained some other
directory that did.
Next I tried coding into my application the ability to delete these extra files and directories using IsolatedStorageFile.DeleteDirectory , IsolageStorageFile.DeleteFile, and IsolagedStorageFile.Remove , but each of these methods received an UnauthorizedAccessException
I finally was able to clean up my unwanted files by doing this:
1. Write code in my application to rename every file or directory whose name starts with a dot
2. Deploy and run the application from 1
3. Uninstall the application from 1
Thoughts? Is this the cleanest solution for now?
Is this the correct place to report what I think is a bug?
Thanks!

When I ran `ISETool.exe rs...` , the current directory on my desktop accidentally contained a bunch of extra directories starting with a dot (in my case, ".git"), and it looks to me like ISETool copied all of the subdirectories from my desktop to
my phone like it was supposed to.
(Of course, I wasn't planning to make a bunch of directories with names starting with a dot, and I don't plan to intentionally do it in the future either; it was just a side-effect of the fact that the `cd` in my batch file failed, and so the working directory
wasn't what I expected it to be when ISETool ran)

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