Dos2unix doesn't convert some RDF files to BINARY...

Hi,
I have a peculiar issue with a couple of RDF's.
My scripts copies all the files to a temp directory; move them to the relevant tops/paths and then do a "dos2unix" on the RDF and RTF files.
Majority of the reports work fine when this is done.
But this doesn't work fine for 2 RDFs.
1) I have customized AR Customer Invoice program (RAXINV_SEL.rdf).
Once i run the installation scripts, it copies everything and does a dos2unix on RDF and RTF files. I can see the custom RDF (XX_RAXINV_SEL.rdf) in $CUSTOM_TOP/reports/US directory.
It doesn't even throw any error when i run the below command in the Custom_Top.
[chundurk-DEV]/u01/oracle/EBSDEV/apps/apps_st/appl/xxabc/12.0.0/reports/US > dos2unix XX_RAXINV_SEL.rdf
dos2unix: converting file XX_RAXINV_SEL.rdf to UNIX format ...
[chundurk-DEV]/u01/oracle/EBSDEV/apps/apps_st/appl/xxabc/12.0.0/reports/US >
But when i run the report, It thows the below error:
REP-1070: Error while opening or saving a document.
REP-0110: Unable to open file '/u01/oracle/EBSDEV/apps/apps_st/appl/xxbwp/12.0.0/reports/US/XX_RAXINV_SEL.rdf'.
When i drag the RDF to $CUSTOM_TOP/reports/US in BINARY Mode using FTP, the report works perfectly fine.
2) This is happening the same way for one of my custom reports too.
We've developed about 50-60 reports and all of them work fine, except these 2 reports.
Please suggest. Thanks in advance for your help.
Regards,
Kesava

Gareth,
Lets ignore the functionality of migration tool for now; its happening the same when i do it directly using SSH Secure Shell Unix & FTP tool.
The steps i generally follow to migrate the reports are provided below:
1. Logged in to SSH Secure Shell Unix & FTP tool.
2. Created a temporary folder say 'reports' in /home/user directory.
3. Drag all the report files to /home/user/reports directory in default mode i.e., ASCII (Migration tool ClearQuest also does the same).
4. Then provide permissions on these files:
chmod 755 *.*
5. Run the shell Script:
090xxbwp_inv_mov_apps.sh apps apps ghoord01:1521:EBSDEV.
Shell script just has the commands shown below:
1. cp -f 090XXBWP_INV_MOV.rdf $XXBWP_TOP/reports/US/XXBWP_INV_MOV.rdf
cp -f 090XXBWP_INV_MOV.rtf XXBWP_INV_MOV.rtf
2. FNDLOAD $1/$2 O Y UPLOAD $FND_TOP/patch/115/import/afcpprog.lct 090XXBWP_INV_MOV_CP.ldt - CUSTOM_MODE=FORCE
FNDLOAD $1/$2 0 Y UPLOAD $XDO_TOP/patch/115/import/xdotmpl.lct 090XXBWP_INV_MOV_XML.ldt - CUSTOM_MODE=FORCE
3. dos2unix $XXBWP_TOP/reports/US/XXBWP_INV_MOV.rdf
dos2unix XXBWP_INV_MOV.rtf
4. chmod 755 $XXBWP_TOP/reports/US/XXBWP_INV_MOV.rdf
chmod 755 XXBWP_INV_MOV.rtf
5. XDOLoader command to attach the RTF File to XML Template Skeleton.
Once this is done; It works perfectly fine for all the reports (RDF's), except two of them.
For the two reports that doesn't work; it thows the below error when the report is ran in APPS:
REP-0110: Unable to open file 'XXBWP_INV_MOV.rdf'.
REP-1070: Error while opening or saving a document.
REP-0110: Unable to open file '/u01/oracle/EBSDEV/apps/apps_st/appl/xxbwp/12.0.0/reports/US/XXBWP_INV_MOV.rdf'.
Workaround currently in Use:
Transfer the RDF file manually in BINARY MODE to $XXBWP_TOP/reports/US directory and the issue is resolved.
Request you to let me know if you can provide me with any permanant solution for this.
Thanks,
Kesava

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