1080i to 720p via After Effects Best Practice?

Hi, I have some footage which was shot at 1080i, the required output is going to be 720p.  The problem is that I would like to use some of the extra frame to reframe some of the shots and as there were two camera's used, the colour varies, so I will also need to fix that.
My initial plan was to cut the sequence in Premiere using a 1080i preset then DL the sequence from within After Effects using a 720p composition.  From here I can do the reframing and colour work.  However will this take care of deinterlacing? Or does anyone know of a better workflow to get the results I need?
Cheers

Just to update this incase somebody else finds it useful, decided I would have to spend some time testing the best route before actually starting the project.
So the source footage was shot @ 1080 50i AVCHD (Cannon Legria HF21 and Panasonic HDC-HS700).  The desired outcome of the footage is web distribution, so mp4 @ 720p 25fps.
During editing I really wanted to re-frame some of the shots and also give some motion to some i.e. slow panning.  On top of that the two cameras used, always seem to give different colours in post - no matter how much you try to match the LCD display's during the actual shoot.
Ok so the problem I initally encountered was with jaggered edges when deinterlacing (can't afford any third pary plugin's at the moment).
So that's the background - I tried a couple of different routes, however the best way I have found is to edit the footage in Premiere using the default 1080i AVCHD preset, keeping the Cannon footage on video 1 and the Panasonic footage on video 2.  Once all the editing is done, duplicate the sequence and in one enable video 1 and in the other enable video 2.
Then jump into After Effects use dynamic link to open the the two sequences - here I open the interpret footage settings and make sure that the field order is set correctly and that 'Preserve Edges' is ticked.
I then created a new composition with 720p settings and put the the two Premiere sequences in it.  Then it is just a case of using keyframes to reframe the footage.  Also it allows for applying different colour correction to the footage shot on each camera.
I also found that this process decreases the jagged edges found going from interlace to progressive.
Hope that helps someone, or someone can tell me I am going the long way round

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    http://sourceforge.net/projects/tapigen
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