Acrobat Javascript button not loading when PDF is opened in browser

We have a requirement to have a custom print button in Acrobat Reader 9.1.3. We've created this via a JavaScript file stored in the users application data Adobe javascript folder. The button appears when Acrobat is started up normally and works as expected. However when opening a pdf file via Internet Explorer 7 acrobat is loaded inside the browser but the button does not appear automatically. Instead we need to right click on the tool bar and select Add on tools for the button to appear. Once loaded it works as expected.
Now I was wondering is there a way to make the button to appear automatically when acrobat is launched from within IE as my users are getting a bit annoyed now. I've been searching all over the place and can't find a solution to this.
Am hoping someone here might have an idea as to what the problem might be. I've attached the code I'm using below.
Thanks in advance
app.addToolButton({
cName: "myToolButton",
cExec: "printGreen()",
cEnable: true,
cTooltext: "Print to Green",
cLabel: "Print to Green"
global.objDoc = this;
printGreen = app.trustedFunction (
function()
app.beginPriv();
var objPrintParams = this.getPrintParams();
objPrintParams.printerName = "\\\\burns\\prn-cash-copier";
objPrintParams.interactive = objPrintParams.constants.interactionLevel.automatic;
this.print(objPrintParams);
app.endPriv();

OK... I'm still puzzled. There seems to be something else that controls whether Acrobat JavaScript runs or not.
If I'm loading a pdf stream though a http GET, JavaScript in Acrobat is run even when the setting in Edit->Preferences is disabled.
<body>
<iframe height=600 width=400 src = "http://<some servlet that returns a pdf stream>" />
</body>
If I'm loading the pdf from a file...
<body>
<iframe height=600 width=400 src = "<pdf file path>" />
</body>
... the expected warning (that Adobe javascript is disabled) pops up
The http response in the first case is something like...
HTTP/1.1 200 OK
Pragma: public
Content-Type: application/pdf
Content-Encoding: no-compress
Content-Language: en-US
Expires: 0
Accept-Ranges: bytes
Server: Microsoft-IIS/7.5
X-UA-Compatible: IE=EmulateIE7
Content-Disposition: inline;filename=<some UNC file path>
Server: WebSphere Application Server/7.0
X-Powered-By: ASP.NET
Date: Tue, 17 Jun 2014 19:19:09 GMT
Connection: close
%PDF-1.6
%��
2 0 obj
<</Metadata 36 0 R/Pages 3 0 R/OCProperties<</D<</RBGroups[]/ON[27 0 R]/Order 26 0 R>>/OCGs[27 0 R]>>/OpenAction 29 0 R/Type/Catalog/AA 31 0 R>>
endobj
Do you have any idea why this is happening?
Thanks,
Radu

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