Can you configure DNG converter to only convert the RAW files in a folder (and skip the JPG's?)

I just downloaded DNG converter last night to convert the CR2 (raw) files from my Canon S100.  I like that it converts a folder at a time...However, it also converts the JPG files as well, which I don't want it to do. 
I did not see a way of specifying which types of files or convert (or omit from the convert).  Is there a way?
Thanks in advance.
John

That is an excellent question. 
With my Nikon SLR, I only shoot RAW images.  The ACR with my Photoshop Elements can convert those. I recently bought a Canon S100 for a pocket-sized travel camera.  I took it on a trip to New York last week, where I took a bunch of pictures.  Since it was a brand-new camera, I wasn't sure how simple it would be to convert RAW images (my version of Elements won't do it, it turns out), so I either shot in JPG or JPG+RAW.  The JPG+RAW shots where ones I thought I might want to adjust later.  In either case, I have access to the JPG's for all my shots (for quickly throwing onto Facebook or whatever).  Obviously I'm in the process of trying to figure out how to process the RAW images.

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