Certain links on the iPad won't open on some sites...

So we have two websites which we'd like to make sure look good and work correctly on iPads and iPhones. One is the production site and one is the development site. Both sites currently have the exact same code.
When accessing links on the iPad, only those on the dev site open when touched. Links on the production site don't react when touched unless a user holds their finger down on it to open the "open in a new tab" dialog box.
The sites are hosted on different servers. Both are running Linux distributions.
The site does this in both Safari and Chrome. Resetting the iPad and clearing cache and history have no effect.
Please help! Thanks.
E.E. Prom

Firebug shows these errors on the Develoment tildetest url:
NetworkError: 404 Not Found - http://tildetest.cogs.indiana.edu/about-us/%3C?=$wwwRoot?%3Efiles_assets/css/img _shadow.css"
"NetworkError: 404 Not Found - http://tildetest.cogs.indiana.edu/about-us/%3C?=$wwwRoot?%3Efiles_assets/css/vie w.css"
"NetworkError: 404 Not Found - http://tildetest.cogs.indiana.edu/about-us/%3C?=$wwwRoot?%3Efiles_assets/javascr ipt/pform/calendar.js" 
"NetworkError: 404 Not Found - http://tildetest.cogs.indiana.edu/about-us/%3C?=$wwwRoot?%3Efiles_assets/javascr ipt/popup.js"
"NetworkError: 404 Not Found - http://www.cogs.indiana.edu/images/2006/dvsmall.jpg"
"NetworkError: 404 Not Found - http://tildetest.cogs.indiana.edu/about-us/%3C?=$wwwRoot?%3Efiles_assets/css/vie w.css"
"NetworkError: 404 Not Found - http://tildetest.cogs.indiana.edu/about-us/%3C?=$wwwRoot?%3Efiles_assets/javascr ipt/popup.js"
"NetworkError: 404 Not Found - http://www.cogs.indiana.edu/images/2006/dvsmall.jpg" 
Which are not present in the production site. Seems one of those missing files is messing with the links in some way. But since they aren't loaded for development, the links work as they should.

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