Certification Validation fails only when executed through Command prompt

I am developing a testing application using Java which calls multiples services a certain number of times. A few of these services are https protocol and hence require certification validation when the call is established.
The testing application works fine when i run it on Eclipse but the requirement is to run a .bat file which in turn will call the java class which has some logic and then call the client stub (which i generated on Eclipse using the wsdl)
The problem is when i try calling the java class from .bat file or command prompt the call fails with the following error :-
======== Running SecurityService ================
16-May-2011 11:40:36 org.apache.axis.utils.JavaUtils isAttachmentSupported
WARNING: Unable to find required classes (javax.activation.DataHandler and javax.mail.internet.MimeMultipart). Attachmen
t support is disabled.
AxisFault
faultCode: {http://schemas.xmlsoap.org/soap/envelope/}Server.userException
faultSubcode:
faultString: javax.net.ssl.SSLHandshakeException: sun.security.validator.ValidatorException: PKIX path validation faile
d: java.security.cert.CertPathValidatorException: subject/issuer name chaining check failed
faultActor:
faultNode:
faultDetail:
{http://xml.apache.org/axis/}stackTrace:javax.net.ssl.SSLHandshakeException: sun.security.validator.ValidatorExc
eption: PKIX path validation failed: java.security.cert.CertPathValidatorException: subject/issuer name chaining check f
ailed at com.sun.net.ssl.internal.ssl.Alerts.getSSLException(Alerts.java:174)
at com.sun.net.ssl.internal.ssl.SSLSocketImpl.fatal(SSLSocketImpl.java:1591)
at com.sun.net.ssl.internal.ssl.Handshaker.fatalSE(Handshaker.java:187)
at com.sun.net.ssl.internal.ssl.Handshaker.fatalSE(Handshaker.java:181)
at com.sun.net.ssl.internal.ssl.ClientHandshaker.serverCertificate(ClientHandshaker.java:975)
at com.sun.net.ssl.internal.ssl.ClientHandshaker.processMessage(ClientHandshaker.java:123)
at com.sun.net.ssl.internal.ssl.Handshaker.processLoop(Handshaker.java:516)
at com.sun.net.ssl.internal.ssl.Handshaker.process_record(Handshaker.java:454)
at com.sun.net.ssl.internal.ssl.SSLSocketImpl.readRecord(SSLSocketImpl.java:884)
at com.sun.net.ssl.internal.ssl.SSLSocketImpl.performInitialHandshake(SSLSocketImpl.java:1096)
at com.sun.net.ssl.internal.ssl.SSLSocketImpl.startHandshake(SSLSocketImpl.java:1123)
at com.sun.net.ssl.internal.ssl.SSLSocketImpl.startHandshake(SSLSocketImpl.java:1107)
at org.apache.axis.components.net.JSSESocketFactory.create(JSSESocketFactory.java:186)
at org.apache.axis.transport.http.HTTPSender.getSocket(HTTPSender.java:191)
at org.apache.axis.transport.http.HTTPSender.writeToSocket(HTTPSender.java:404)
at org.apache.axis.transport.http.HTTPSender.invoke(HTTPSender.java:138)
at org.apache.axis.strategies.InvocationStrategy.visit(InvocationStrategy.java:32)
at org.apache.axis.SimpleChain.doVisiting(SimpleChain.java:118)
at org.apache.axis.SimpleChain.invoke(SimpleChain.java:83)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:165)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at com.telenor.security.server.service.SecurityServerServiceHTTPBindingStub.loginByPasswordForAssertion(T
elenorSecurityServerServiceHTTPBindingStub.java:812)
I have made sure that the required certificates are imported into the Java Keystore . What i find confusing is how does Eclipse not have an issue with the certificate validation ?

JSSE Reference Guide, Customization section.

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