Copy startup-config running-config

I am replacing a css-11150 switch. I received as version 4.01; therefore I upgraded it to version 6.10-405. The upgrade went fine.
Then I ftp the config file to the css box and copy it to startup-config. It worked ok also.
The problem started here -> when I copy startup-config to running-config, it appeared copied ok (no error message), but when I did a "sh run", the running config is empty, (no statements at all). My startup config has about 100 lines of coding. I hate to type in every single line.
Do any one running into this kind of strange problem?
thanks.

I upgraded from Ver 4 to ver 6.10 using the upgrade script.
upgrade
To upload the startup-config
copy ftp
Below is the "sh start", "sh run" "sh ver",
as you can see, when I did a sh run, it returns nothing. (i deleted some lines on sh start here since it is too big to post)
CSS11150# sh startup-config
!*************************** GLOBAL ***************************
sntp server 168.38.250.142 version 1
snmp location "701 West 51 st, Austin, TX 78751 "
snmp community Shirt1 read-only
snmp contact "Network Engineer, NGIT, (512)377-2222"
ip route 0.0.0.0 0.0.0.0 168.38.131.1 1
!************************* INTERFACE *************************
interface e1
bridge vlan 12
phy 100Mbits-FD
interface e2
bridge vlan 12
phy 100Mbits-FD
interface e3
bridge vlan 12
phy 100Mbits-FD
interface e4
bridge vlan 12
phy 100Mbits-FD
interface e5
bridge vlan 12
phy 100Mbits-FD
interface e6
bridge vlan 12
phy 100Mbits-FD
interface e7
bridge vlan 12
phy 100Mbits-FD
interface e8
bridge vlan 12
phy 100Mbits-FD
interface e9
bridge vlan 12
phy 100Mbits-FD
interface e10
--Cancelled---
CSS11150# sh run
CSS11150# copy startup-config running-config
Copying(\)
CSS11150# sh run
CSS11150# sh start
^
%% Invalid input detected at '^' marker.
CSS11150# sh startup-config
!*************************** GLOBAL ***************************
sntp server 168.38.250.142 version 1
snmp location "701 West 51 st, Austin, TX 78751 "
snmp community Shirt1 read-only
snmp contact "Network Engineer, NGIT, (512)377-2222"
ip route 0.0.0.0 0.0.0.0 168.38.x.x
!************************* INTERFACE *************************
interface e1
bridge vlan 12
phy 100Mbits-FD
interface e2
bridge vlan 12
phy 100Mbits-FD
interface e3
bridge vlan 12
phy 100Mbits-FD
interface e4
bridge vlan 12
phy 100Mbits-FD
interface e5
bridge vlan 12
phy 100Mbits-FD
interface e6
bridge vlan 12
phy 100Mbits-FD
interface e7
bridge vlan 12
phy 100Mbits-FD
interface e8
bridge vlan 12
phy 100Mbits-FD
interface e9
bridge vlan 12
phy 100Mbits-FD
interface e10
bridge vlan 12
phy 100Mbits-FD
interface e11
bridge vlan 12
phy 100Mbits-FD
interface e12
bridge vlan 12
phy 100Mbits-FD
interface e15
bridge vlan 12
phy 100Mbits-FD
description "Link to PRSSWINTERS1-7/21"
interface e16
phy 100Mbits-FD
description "Link to PRSSWINTERS1-7/1"
!************************** CIRCUIT **************************
circuit VLAN1
ip address 168.38.x.x 255.255.255.128
circuit VLAN12
ip address 168.38.x.y 255.255.255.128
!************************** SERVICE **************************
service Web29-tare.dfps.state.tx.us
ip address 168.38.49.122
protocol tcp
port 8010
keepalive type tcp
service Web29-tarefile.dfps.state.tx.us
ip address 168.38x.x
protocol tcp
keepalive type tcp
port 8010
service iws-86
protocol tcp
ip address 168.38.x.x
keepalive port 80
keepalive type tcp
active
content www.txabusehotline.org
add service www.txabusehotline.org-113
vip address 168.38.x.x
protocol tcp
advanced-balance sticky-srcip
active
CSS11150#
CSS11150# sh run
CSS11150# sh version
Version: ap0610405 (6.10 Build 405)
Flash (Locked): 4.01 Build 32
Flash (Operational): 6.10 Build 405
Type: PRIMARY
Licensed Cmd Set(s): Standard Feature Set
CSS11150#
CSS11150#

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