CPU Usage High, Individual Apps Not using Total

Hi everyone,
I've got a 2007 white Macbook currently running the most up to date version of Snow Leopard and recently the fan has been on a lot more often than it usually is and when I check in Acitivity Monitor the CPU usage is extremely high. Normally it's around 2-4% tops but several times over the last few months it's been at 50-60% sustained usage for a long time (upwards of 20 minutes, then I just reboot it). Once or twice it waws higher than 100%. I checked Activity Monitor and killed the normal culprits like Shockwave and Flash, then anything with Microsoft in the name. I'm a big tabbed browser user so I closed off google Chrome. Right now, running Adium, iCal, Powerpoint (small file size, only 5 slides), and Word, 45% of the CPU is currently in use. I went through and systematically closed everything but the CPU usage is still around 45% after closing all active programs in the dock other than Finder and Activity Monitor. The strange part for me is that the amount of CPU usage is not the sum of the CPU usage of all the programs currently running. It's not even close (like 1% versus 45%)
Does anyone know what might be wrong? Rebooting it will usually fix this problem, but I'm worried I either have Malware, a Trojan that iAntivirus isn't detecting, and my computer is somehow being used without my knowledge or something is wrong with my Mac.
Thanks in advance for any help!
Specs are Macbook 3,1, Intel Core 2 Duo 2.2 GHz, 4GB ram

hrishy wrote:
Hi
Why so much time is being spent in CPU ?
Apologies the rich text editor is not working and i am unabel to format this code properly
Rows Operation
______0 NESTED LOOPS (cr=117469550 pr=444 pw=0 time=1670966102 us)
(snip)
______0                    NESTED LOOPS (cr=117469550 pr=444 pw=0 time=1670965844 us)
462,472                       NESTED LOOPS (cr=1389078 pr=196 pw=0 time=12429546 us)
(snip)
______0                       TABLE ACCESS FULL CON (cr=116080472 pr=248 pw=0 time=1889064945 us)
(snip)
The execution plan shows a nested loop join between a row source containing 462,472 rows and a full table scan of the table CON - that means the table CON was full table scanned 462,472 times, resulting in 116,080,472 consistent gets in 9 executions. The consistent gets are the cause of the high CPU usage. You might work through the links provided by Narendra to find the cause of the nested loop joins. Maybe this indicates a problem with the object statistics, or possibly it is caused by an unfortunate set of parameters that affected the optimizer's decisions.
Charles Hooper
Co-author of "Expert Oracle Practices: Oracle Database Administration from the Oak Table"
http://hoopercharles.wordpress.com/
IT Manager/Oracle DBA
K&M Machine-Fabricating, Inc.

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What I have found so far is that this corresponds to increased GC activity.
Let me list my environment specs before I proceed, though:
CPU: Dual Xeon 3.06GHz
RAM: 2GB
OS: RHEL4.4 (2.6.9-42.0.2.ELsmp)
JVM build 1.5.0_03-b07 (BEA JRockit(R) (build dra-45238-20050523-2008-linux-ia32, R25.2.0-28))
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[Fri Oct 20 15:54:18 2006][22855][cpuinfo] Detected SMP with 2 CPUs that support HT.
[Fri Oct 20 15:54:18 2006][22855][cpuinfo] Trying to determine if HT is enabled.
[Fri Oct 20 15:54:18 2006][22855][cpuinfo] Trying to read from /dev/cpu/0/cpuid
[Fri Oct 20 15:54:18 2006][22855][cpuinfo] Warning: Failed to read from /dev/cpu/0/cpuid
[Fri Oct 20 15:54:18 2006][22855][cpuinfo] Trying to read from /dev/cpu/1/cpuid
[Fri Oct 20 15:54:18 2006][22855][cpuinfo] Warning: Failed to read from /dev/cpu/1/cpuid
[Fri Oct 20 15:54:18 2006][22855][cpuinfo] HT is: supported by the CPU, not enabled by the OS, enabled in JRockit.
[Fri Oct 20 15:54:18 2006][22855][cpuinfo] Warning: HT enabled even though OS does not seem to support it.
[Fri Oct 20 15:54:55 2006][22855][memory ] GC strategy: System optimized over throughput (initial strategy singleparpar)
[Fri Oct 20 15:54:55 2006][22855][memory ] heap size: 786432K, maximal heap size: 786432K
[Fri Oct 20 16:07:30 2006][22855][memory ] Changing GC strategy to generational, parallel mark and parallel sweep
[Fri Oct 20 16:07:30 2006][22855][memory ] 791.642-791.874: GC 786432K->266892K (786432K), 232.000 ms
[Fri Oct 20 16:08:02 2006][22855][memory ] 824.122: nursery GC 291998K->274164K (786432K), 175.873 ms
[Fri Oct 20 16:09:51 2006][22855][memory ] 932.526: nursery GC 299321K->281775K (786432K), 110.879 ms
[Fri Oct 20 16:10:24 2006][22855][memory ] 965.844: nursery GC 308151K->292222K (786432K), 174.609 ms
[Fri Oct 20 16:11:54 2006][22855][memory ] 1056.368: nursery GC 314718K->300068K (786432K), 66.032 ms
[Sat Oct 21 23:21:09 2006][22855][memory ] 113210.427: nursery GC 734274K->676137K (786432K), 188.985 ms
[Sat Oct 21 23:30:41 2006][22855][memory ] 113783.140: nursery GC 766601K->708592K (786432K), 96.007 ms
[Sat Oct 21 23:36:15 2006][22855][memory ] 114116.332-114116.576: GC 756832K->86835K (786432K), 243.333 ms
[Sat Oct 21 23:48:20 2006][22855][memory ] 114841.653: nursery GC 182299K->122396K (786432K), 175.252 ms
[Sat Oct 21 23:48:52 2006][22855][memory ] 114873.851: nursery GC 195060K->130483K (786432K), 142.122 ms
[Sun Oct 22 00:01:31 2006][22855][memory ] 115632.706: nursery GC 224096K->166618K (786432K), 327.264 ms
[Sun Oct 22 00:16:37 2006][22855][memory ] 116539.368: nursery GC 246564K->186328K (786432K), 173.888 ms
[Sun Oct 22 00:26:21 2006][22855][memory ] 117122.577: nursery GC 279056K->221543K (786432K), 170.367 ms
[Sun Oct 22 00:26:21 2006][22855][memory ] 117123.041: nursery GC 290439K->225833K (786432K), 69.170 ms
[Sun Oct 22 00:29:10 2006][22855][memory ] 117291.795: nursery GC 298947K->238083K (786432K), 207.200 ms
[Sun Oct 22 00:39:05 2006][22855][memory ] 117886.478: nursery GC 326956K->263441K (786432K), 87.009 ms
[Sun Oct 22 00:55:22 2006][22855][memory ] 118863.947: nursery GC 357229K->298971K (786432K), 246.643 ms
[Sun Oct 22 01:08:17 2006][22855][memory ] 119638.750: nursery GC 381744K->322332K (786432K), 147.996 ms
[Sun Oct 22 01:11:22 2006][22855][memory ] 119824.249: nursery GC 398678K->336478K (786432K), 93.046 ms
[Sun Oct 22 01:21:35 2006][22855][memory ] 120436.740: nursery GC 409150K->345186K (786432K), 81.304 ms
[Sun Oct 22 01:21:38 2006][22855][memory ] 120439.582: nursery GC 409986K->345832K (786432K), 153.534 ms
[Sun Oct 22 01:21:42 2006][22855][memory ] 120443.544: nursery GC 410632K->346473K (786432K), 121.371 ms
[Sun Oct 22 01:21:44 2006][22855][memory ] 120445.508: nursery GC 411273K->347591K (786432K), 60.688 ms
[Sun Oct 22 01:21:44 2006][22855][memory ] 120445.623: nursery GC 412391K->347785K (786432K), 68.935 ms
[Sun Oct 22 01:21:45 2006][22855][memory ] 120446.576: nursery GC 412585K->348897K (786432K), 152.333 ms
[Sun Oct 22 01:21:45 2006][22855][memory ] 120446.783: nursery GC 413697K->349080K (786432K), 70.456 ms
[Sun Oct 22 01:34:16 2006][22855][memory ] 121197.612: nursery GC 437378K->383392K (786432K), 165.771 ms
[Sun Oct 22 01:37:37 2006][22855][memory ] 121398.496: nursery GC 469709K->409076K (786432K), 78.257 ms
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[Sun Oct 22 01:44:03 2006][22855][memory ] 121785.259: nursery GC 536605K->478156K (786432K), 132.293 ms
[Sun Oct 22 01:44:04 2006][22855][memory ] 121785.603: nursery GC 568408K->503635K (786432K), 71.751 ms
[Sun Oct 22 01:50:39 2006][22855][memory ] 122180.985: nursery GC 591332K->530811K (786432K), 131.831 ms
[Sun Oct 22 02:13:52 2006][22855][memory ] 123573.719: nursery GC 655566K->595257K (786432K), 117.311 ms
[Sun Oct 22 02:36:04 2006][22855][memory ] 124905.507: nursery GC 688896K->632129K (786432K), 346.990 ms
[Sun Oct 22 02:50:24 2006][22855][memory ] 125765.715-125765.904: GC 786032K->143954K (786432K), 189.000 ms
[Sun Oct 22 02:50:26 2006][22855][memory ] 125767.535-125767.761: GC 723232K->70948K (786432K), 225.000 ms
vvvvv
[Sun Oct 22 02:50:27 2006][22855][memory ] 125768.751-125768.817: GC 712032K->71390K (786432K), 64.919 ms
[Sun Oct 22 02:50:28 2006][22855][memory ] 125769.516-125769.698: GC 711632K->61175K (786432K), 182.000 ms
[Sun Oct 22 02:50:29 2006][22855][memory ] 125770.753-125770.880: GC 709632K->81558K (786432K), 126.000 ms
[Sun Oct 22 02:50:30 2006][22855][memory ] 125771.699-125771.878: GC 708432K->61368K (786432K), 179.000 ms
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Now, if you look at [Sun Oct 22 02:50:27 2006], that's when everything changes. GC starts running every second (later on it's running 3 times a second) doing huge sweeps. It never goes through the nursery again, although the strategy is still generational.
It's all downhill from this point on, and it's a matter of hours (maybe a day) before we restart the server.
I guess my only question is: What would cause such GC behavior?
I would appreciate your ideas/comments!
Thanks,
Tenyo

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