Dreamweaver CS5.5 template PHP file path bug

I have a template that I am using for my website, it is a PHP template and for some reason whenever I have some links within the PHP code blocks that include other .php files. My code is:
<?php
//Code In template
include('../scripts/MySqlConnection.php');
include('../scripts/login.php');
?>
The code is just including some files, but when I update all the pages that use this Template they dont put the right links on them, like so:
<?php
//Code That Appears On Child Page
include('scripts/MySqlConnection.php');
include('../scripts/login.php');
?>
For some reason the first link is correct since this document is in the root of the site instead of in the Templates folder like my template is, but the second "include" statement has the wrong link inside of it. Even if I switch them around its always the very first include statement that is correct and the 2nd is always wrong.
Also the links are all relative to the document and not site root in the "Manage Sites..." dialog.
Is there anyway to fix this? I heard that this was a quirk/bug in Dreamweaver 8 or something but is it still not fixed in this version?
Thanks

Yes I guess that I am gonna have to use one of those solutions, but it still is weird that this is happening within the code though. I found one thread where the solution was to put the include tags into a seperate PHP block like this:
//Template
<?php include('../scripts/MySqlConnection.php'); ?>
<?php include('../scripts/login.php'); ?>
And it actually outputted the correct links on the child page which is really weird but this was from like Dreamweaver 8 or MX or something because the thread was from like 2007 which is weird that they hadn't fixed this bug yet considering its 2012 and Dreamweaver CS5.5 still has the bug.

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