Export-csuserdata gives timout

Hello,
We are building a backup script, and when it comes to the exportation of all the users info, we get a time out. The output file is created, but incomplete...
The error is the following:
export-csuserdata : Timeout expired.  The timeout period elapsed prior to
completion of the operation or the server is not responding.  This failure
occured while attempting to connect to the Principle server.
At ...\Lync2013\Tools\Backup-Restoration\BackupScriptLync2013.ps1:139 char:1
+ export-csuserdata -poolfqdn "poolfqdn" -filename $filepath
+ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
~~~
    + CategoryInfo          : NotSpecified: (:) [Export-CsUserData], SqlExcept
   ion
    + FullyQualifiedErrorId : System.Data.SqlClient.SqlException,Microsoft.Rtc
   .Management.BlobStore.ExportOcsUserStoreDataCmdlet
Does anyone knows how to fix this? We have approx 37000 users...
Many thanks in advance.

So you get valid data in the XML within the ZIP?  How many users does it get through if you run a "find /c" on it?
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    **** Error      Mon Nov 25 19:59:31 IST 2013    1385389771300   /atg/dynamo/service/IdGenerator         at atg.service.idgen.AbstractSequentialIdGenerator.
    doStartService(AbstractSequentialIdGenerator.java:621)
    **** Error      Mon Nov 25 19:59:31 IST 2013    1385389771300   /atg/dynamo/service/IdGenerator         at atg.nucleus.GenericService.startService(GenericS
    ervice.java:496)
    **** Error      Mon Nov 25 19:59:31 IST 2013    1385389771300   /atg/dynamo/service/IdGenerator         at atg.nucleus.NucleusNameResolver.startService(Nuc
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    ucleusNameResolver.java:826)
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    ucleusNameResolver.java:590)
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    ucleusNameResolver.java:571)
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    eusNameResolver.java:416)
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    eusNameResolver.java:1120)
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    ucleusNameResolver.java:826)
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    ucleusNameResolver.java:590)
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    ool.ResourcePoolException: java.sql.SQLException: java.lang.ClassNotFoundException: com.mysql.jdbc.Driver
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    **** Error      Mon Nov 25 19:59:31 IST 2013    1385389771300   /atg/dynamo/service/IdGenerator         at atg.nucleus.NucleusNameResolver.startService(Nuc
    leusNameResolver.java:1458)
    **** Error      Mon Nov 25 19:59:31 IST 2013    1385389771300   /atg/dynamo/service/IdGenerator         at atg.nucleus.NucleusNameResolver.configureAndStar
    tService(NucleusNameResolver.java:1206)
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    ucleusNameResolver.java:826)
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    ucleusNameResolver.java:590)
    **** Error      Mon Nov 25 19:59:31 IST 2013    1385389771300   /atg/dynamo/service/IdGenerator         at atg.nucleus.NucleusNameResolver.createFromName(N
    ucleusNameResolver.java:571)
    **** Error      Mon Nov 25 19:59:31 IST 2013    1385389771300   /atg/dynamo/service/IdGenerator         at atg.nucleus.NucleusNameResolver.resolveName(Nucl
    eusNameResolver.java:416)
    **** Error      Mon Nov 25 19:59:31 IST 2013    1385389771300   /atg/dynamo/service/IdGenerator         at atg.nucleus.NucleusNameResolver.resolveName(Nucl
    eusNameResolver.java:1120)
    **** Error      Mon Nov 25 19:59:31 IST 2013    1385389771300   /atg/dynamo/service/IdGenerator         at atg.nucleus.ConfigurationRef.getValue(Configurat
    ionRef.java:81)
    **** Error      Mon Nov 25 19:59:31 IST 2013    1385389771300   /atg/dynamo/service/IdGenerator         at atg.nucleus.SimpleComponentState.setBeanProperty
    (SimpleComponentState.java:379)
    **** Error      Mon Nov 25 19:59:31 IST 2013    1385389771300   /atg/dynamo/service/IdGenerator         at atg.nucleus.SimpleConfigurationState.saveToBean(
    SimpleConfigurationState.java:218)
    **** Error      Mon Nov 25 19:59:31 IST 2013    1385389771300   /atg/dynamo/service/IdGenerator         at atg.nucleus.SimpleConfigurationState.configureBe
    an(SimpleConfigurationState.java:241)
    **** Error      Mon Nov 25 19:59:31 IST 2013    1385389771300   /atg/dynamo/service/IdGenerator         at atg.nucleus.BeanConfigurator.configureBean(BeanC
    onfigurator.java:275)
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    ce(PropertyConfiguration.java:763)
    **** Error      Mon Nov 25 19:59:31 IST 2013    1385389771300   /atg/dynamo/service/IdGenerator         at atg.nucleus.SingleNucleusConfigurator.configureS
    ervice(SingleNucleusConfigurator.java:62)
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    **** Error      Mon Nov 25 19:59:31 IST 2013    1385389771300   /atg/dynamo/service/IdGenerator         at atg.nucleus.NucleusNameResolver.configureAndStar
    tService(NucleusNameResolver.java:1192)
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    ucleusNameResolver.java:826)
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    ucleusNameResolver.java:590)
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    ucleusNameResolver.java:571)
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    **** Error      Mon Nov 25 19:59:31 IST 2013    1385389771300   /atg/dynamo/service/IdGenerator         at atg.nucleus.Nucleus.startNucleus(Nucleus.java:40
    21)
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