Freeze from Song Start instead of Meas 0?

I recorded a concert into Logic, 38 channels, 24 bit, 44.1k. I'm breaking the individual songs out that I want to fix & mix. I'm editing out the regions of each song, then turning those regions into optimized audio files to make it more manageable. We'll open the mixes in another song file, bridge them with applause, and have a nice tidy concert mix.
I want to freeze tracks as I fix them, for less CPU overhead. I want to keep the individual songs with the optimized audio files in their original position in the timeline, so I can reopen the original files and drop them in at their original record position if I mess up the optimized audio file. I've reset the start and end markers with a couple of extra measures (@ 30bpm) before and after the audio.
My problem is that when I freeze a file, it freezes from measure 0, instead of the new song start position. Consequently, it takes a long time to freeze files, and they are huge. As an example, the first song actually started at measure 250 (it was a long pre-show), and even though the lead vocal file is only 50 MB, the freeze file for it is over 400 MB and takes a very long time to create.
How do I get "freeze" to start freezing from measure 249, instead of measure 0?
If that's not an option, is there one that doesn't require relocating my regions to measure 2?
TIA.

I've done a very poor job of describing what I've done. I'll try to clarify.
I have created a new .lso of each song, drawn from the original .lso of the concert. I've even gone to the effort of copying just the portions of the audio files that are in that song (optimizing), so I have a much smaller set of the appropriate audio tracks/files that contain just the audio from that song in each .lso.
I want the audio files of each .lso to remain at their original record position, to facilitate replacing them with originals if they get messed up in editing.
The song "start" has been moved to the beginning of the the files in the timeline for each .lso. The song end has been moved to the end of each, making each new .lso about 4 minutes long, although the start marker for each is at measure 250+
The problem is that "freeze" starts at measure 0, regardless of where the song start marker is placed. True, it stops where the "song end" marker is, but the freeze files are huge in comparison to the original file.
Any way to get freeze to start at the song start marker on the .lso's, instead of at measure 0?

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