G5 Unusual Fan Issue - Need Help

While I have read much about the G5 fan issues, I haven't found anything that matches mine.
This is a 1.8Ghz DP running OS 10.4.9 and it is really noisy due to the 2 drive bay fans running at top speed.
All other fans run properly and respond to the air deflector removal (also checked using iStat Pro)
Apple hardware diagnostics check out fine with everything passing and ambient temperature of the drive area is fine (90 or so degrees)as well.
I understand that the drive temperature sensor controls the speed, but typically the issue has been the other way around. Would unplugging the sensor for testing hurt the logic board? Could the fan be bad? How about the FCU? the other fans seem to work as advertised.
From the sounds of it, the Thermal calibration wouldn't be needed.
Does have anybody any idea of how to correct this or can the FCU be reset? I did reset the PMU several times.
Thanks

Strangely enough, the answer to the problem was that the rpm controls in both the fan and the blower of the media bay were damaged. Power spike?
While they are difficult to come by (they can't be purchased separately as they are part of the enclosure assembly) they are certainly cheaper than a logic board.
Btw, if anyone else has a similar issue, the media blower is the only truly unique part. The media fan is the same as the fan in the speaker/fan assembly which can be easily found.

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    Subrato,
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    If you could help me ASAP I would really appreciate it, as I need to get on with recording urgently! Thank you.
    This question was solved.
    View Solution.

    UPDATE:
    I have also been advised by Pro Tools support that if I add a supported FireWire card with Texas Instrument FireWire chip onto my computer, it may solve the problem. When I asked them how to go about doing this, they responded:
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    http://avid.custkb.com/avid/app/selfservice/search.jsp?DocId=352647
    SIIG FireWire 2-Port ExpressCard
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