IE Applet: load: class jreCheck.class not found.

Applets are not working in IE. The console gives the following trace
Java Plug-in 1.6.0_05
Using JRE version 1.6.0_05 Java HotSpot(TM) Client VM
User home directory = C:\Documents and Settings\adf
load: class jreCheck.class not found.
java.lang.ClassNotFoundException: jreCheck.class
     at sun.applet.AppletClassLoader.findClass(Unknown Source)
     at java.lang.ClassLoader.loadClass(Unknown Source)
     at sun.applet.AppletClassLoader.loadClass(Unknown Source)
     at java.lang.ClassLoader.loadClass(Unknown Source)
     at sun.applet.AppletClassLoader.loadCode(Unknown Source)
     at sun.applet.AppletPanel.createApplet(Unknown Source)
     at sun.plugin.AppletViewer.createApplet(Unknown Source)
     at sun.applet.AppletPanel.runLoader(Unknown Source)
     at sun.applet.AppletPanel.run(Unknown Source)
     at java.lang.Thread.run(Unknown Source)
Exception in thread "Thread-13" java.lang.NullPointerException
     at sun.plugin.util.AnimationPanel.createTranslucentImage(Unknown Source)
     at sun.plugin.util.AnimationPanel.createGradientShapeImage(Unknown Source)
     at sun.plugin.util.AnimationPanel.initBackground(Unknown Source)
     at sun.plugin.util.AnimationPanel.preloadResources(Unknown Source)
     at sun.plugin.util.AnimationPanel.doPaint(Unknown Source)
     at sun.plugin.util.AnimationPanel.run(Unknown Source)
     at java.lang.Thread.run(Unknown Source)
load: class jreCheck.class not found.
java.lang.ClassNotFoundException: jreCheck.class
     at sun.applet.AppletClassLoader.findClass(Unknown Source)
     at java.lang.ClassLoader.loadClass(Unknown Source)
     at sun.applet.AppletClassLoader.loadClass(Unknown Source)
     at java.lang.ClassLoader.loadClass(Unknown Source)
     at sun.applet.AppletClassLoader.loadCode(Unknown Source)
     at sun.applet.AppletPanel.createApplet(Unknown Source)
     at sun.plugin.AppletViewer.createApplet(Unknown Source)
     at sun.applet.AppletPanel.runLoader(Unknown Source)
     at sun.applet.AppletPanel.run(Unknown Source)
     at java.lang.Thread.run(Unknown Source)
I have tried uninstalling, reinstalling, restarting IE etc, tried removed the sun folder from application data, none of which has not helped.
IE version 7.0.5730.11
How can I fix this?
Thanks

This line from your error next could require control for the version in the "java control panel" of the jre(s).
network: Connecting http://www.cmol.nbi.dk/models/epitrans/transcript.class with proxy=HTTP @ <REMOVED>
note the proxy= and look in Network Settings in the *"java control panel"* (not the output panel).

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