Inserting PI into generated XML document

Can anyone tell me how to insert processing instructions into an XML document generated using the xmlcg generated classes? I understand that I can create a PI using the Document::createProcessingInstruction() method but how do I add it as a sibling to the root element? Any insight in this regard will be really appreciated.

Your question is not very clear.
Do you want to know How to insert an element into an XML document?
Answer: I can see you already know how to do it. You have added the element using addContent()
or do you want to know How to display the XML in a tidy format?
Answer: to view the XML in a properly formatted style you can you the Format class. A very basic way of viewing the XML would be:
   * Prints the Document to the specified file.
   * @param doc
   * @param filename
   * @param formatting
  public static void printDocToFile(Document doc, String strFileName,
      boolean formatting)
    XMLOutputter xmlOut = null;
    if (!formatting)
      xmlOut = new XMLOutputter();
    } else
      Format prettyFormat = Format.getPrettyFormat();
      prettyFormat.setOmitEncoding(false);
      prettyFormat.setOmitDeclaration(false);
      xmlOut = new XMLOutputter(prettyFormat);
    try
      if (doc != null)
        FileWriter writer = new java.io.FileWriter(strFileName, true);
        xmlOut.output(doc, writer);
        writer.flush();
        writer.close();
      } else
        System.out.println("Document is null.");
    catch (Exception ex)
      System.out.println(ex);
  }

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                        </xs:documentation>
                   </xs:annotation>
              </xs:attribute>
              <xs:attribute name="Status" type="StatusType" default="ACTIVE">
                   <xs:annotation>
                        <xs:documentation>used to show the related profile data status like "ACTIVE","PENDING","VOID"...</xs:documentation>
                   </xs:annotation>
              </xs:attribute>
              <!--
              <xs:sequence>
                   <xs:element name="ProfileReference" type="ProfileIDType" minOccurs="0" maxOccurs="unbounded">
                        <xs:annotation>
                             <xs:documentation>this will be the place to hold the integrity relationship with other profiles like foreign key if existed and necessary to show up</xs:documentation>
                        </xs:annotation>
                   </xs:element>
              </xs:sequence>
              -->
         </xs:complexType>
         <xs:complexType name="ProfileDataType">
              <xs:annotation>
                   <xs:documentation>meta data associated tightly to each specific type of profile</xs:documentation>
              </xs:annotation>
              <xs:choice>
                   <xs:element name="EnricherParametersProfileData" type="EnricherParametersDataType">
                        <xs:annotation>
                             <xs:documentation>Enricher Parameters related profile data
                   1. one instance of this type may contains all the related System metadata.
                   2. idType part may use to identify different version/release/status
                   </xs:documentation>
                        </xs:annotation>
                   </xs:element>
                   <xs:element name="ExtendProfileData" type="ExtendProfileDataType">
                        <xs:annotation>
                             <xs:documentation>If needed, any profile data not defined within the current release scope can be added here </xs:documentation>
                        </xs:annotation>
                   </xs:element>
              </xs:choice>
         </xs:complexType>
         <xs:complexType name="ExtendProfileDataType">
              <xs:sequence>
                   <xs:element name="ExtendProfile" type="xs:anyType" minOccurs="0"/>
              </xs:sequence>
         </xs:complexType>
         <xs:complexType name="EnricherParametersDataType">
              <xs:sequence>
                   <xs:element name="EnricherParameter" type="EnricherParameter" maxOccurs="unbounded"/>
              </xs:sequence>
         </xs:complexType>
         <xs:complexType name="EnricherParameter">
              <xs:sequence>
                   <xs:element ref="Enricher"/>
              </xs:sequence>
              <xs:attribute name="serviceName" type="xs:string" use="required"/>
              <xs:attribute name="interactionID" type="xs:string"/>
         </xs:complexType>
         <xs:element name="Enricher">
              <xs:annotation>
                   <xs:documentation>Comment describing your root element</xs:documentation>
              </xs:annotation>
              <xs:complexType>
                   <xs:sequence>
                        <xs:element name="Parameters" type="Parameters"/>
                        <xs:element ref="Section" maxOccurs="unbounded"/>
                   </xs:sequence>
              </xs:complexType>
         </xs:element>
         <xs:complexType name="ValueType">
              <xs:attribute name="field" use="required"/>
              <xs:attribute name="value"/>
              <xs:attribute name="action"/>
         </xs:complexType>
         <xs:element name="Section">
              <xs:complexType>
                   <xs:sequence>
                        <xs:element name="Value" type="ValueType" minOccurs="0" maxOccurs="unbounded"/>
                        <xs:element ref="Section" minOccurs="0" maxOccurs="unbounded"/>
                   </xs:sequence>
                   <xs:attribute name="path" use="required"/>
              </xs:complexType>
         </xs:element>
         <xs:complexType name="Parameters">
              <xs:sequence>
                   <xs:element name="Parameter" minOccurs="0" maxOccurs="unbounded">
                        <xs:complexType>
                             <xs:attribute name="name" use="required"/>
                             <xs:attribute name="reference"/>
                        </xs:complexType>
                   </xs:element>
              </xs:sequence>
         </xs:complexType>
         <xs:complexType name="RuleList">
              <xs:annotation>
                   <xs:documentation>an array of rules</xs:documentation>
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              <xs:sequence>
                   <xs:element name="Rule" type="RuleProfile" minOccurs="0" maxOccurs="unbounded"/>
              </xs:sequence>
         </xs:complexType>
         <xs:complexType name="RuleProfile">
              <xs:attribute name="RName" use="required"/>
              <xs:attribute name="RType" type="RuleType" use="required"/>
              <xs:attribute name="Status" default="ON">
                   <xs:annotation>
                        <xs:documentation>By default is ON (or if is missing)</xs:documentation>
                   </xs:annotation>
              </xs:attribute>
              <xs:attribute name="Order"/>
              <xs:attribute name="Direction" type="RouteDirect">
                   <xs:annotation>
                        <xs:documentation>Request / Reply</xs:documentation>
                   </xs:annotation>
              </xs:attribute>
         </xs:complexType>
         <!-- ************** PART II: END COMPLEX OBJECT TYPE DEFINITIONS *********************************** -->
         <!-- ************** PART III: BEGIN ROOT ELEMENTS DEFINITIONS ********************************* -->
         <!-- 0) Profile wrapper root element
    Profile IS USED TO BE AN WRAPPER ELEMENT FOR ALL KIND OF PROFILES NO MATTER WHAT KIND OF PROFILE IT IS
    -->
         <xs:element name="Profile" type="ProfileType">
              <xs:annotation>
                   <xs:documentation>Profile IS USED TO BE AN WRAPPER ELEMENT FOR ALL KIND OF PROFILES NO MATTER WHAT KIND OF PROFILE IT IS</xs:documentation>
              </xs:annotation>
         </xs:element>
    </xs:schema>
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    SQL> begin
    2 dbms_xmlschema.registerSchema
    3 (
    4 schemaurl=>'http://rac3-1-vip:8080/home/'||USER||'/xsd/EHIPProfile_v00.xsd',
    5 schemadoc=>xdbURIType('/home/'||USER||'/xsd/EHIPProfile_v00.xsd').getClob(),
    6 local=>True,
    7 gentypes=>True,
    8 genbean=>False,
    9 gentables=>False
    10 );
    11 End;
    12 /
    PL/SQL procedure successfully completed.
    SQL>
    SQL>
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    <?xml version="1.0" encoding="UTF-8"?>
    <!--Sample XML file generated by XMLSpy v2007 sp2 (http://www.altova.com)-->
    <Profile xmlns="http://www.emergis.com/eHealth/EHIP/data/meta/profile:v1">
         <ProfileID Type="EnricherParametersProfile" Status="ACTIVE" ID="EnricherPP.ID.0001" Name="EnricherPP.ID.0001" Description="EnricherPP.ID.0001" Version="01"/>
         <ProfileData>
              <EnricherParametersProfileData>
                   <EnricherParameter serviceName="LRS_BusinessDomainObject.lrs.businessDomainObject.domainObjectBuilder.concrete.ExceptionCreators:createExceptionV50CategoryCanonicalPart" interactionID="">
                   <Enricher>
                        <Parameters>
                             <Parameter name="MESSAGE_ID" reference="test"/>
                        </Parameters>
                        <Section path="HEADER">
                             <Section path="RESPONSE_TYPE">
                                  <Value field="value" value="I"/>
                             </Section>
                             <Section path="HL7_STANDARD_VERSION">
                                  <Value field="value" value="HL7V3"/>
                             </Section>
                             <Section path="DESIRED_ACKNOWLEDGMENT_TYPE">
                                  <Value field="value" value="NE"/>
                             </Section>
                             <Section path="SENDING_NETWORK_ADDRESS">
                                  <Value field="value" value=""/>
                             </Section>
                             <Section path="SENDING_APPLICATION_IDENTIFIER">
                                  <Value field="root" value="2.16.840.1.113883.3.133.1.3"/>
                                  <Value field="extension" value=""/>
                             </Section>
                             <Section path="SENDING_APPLICATION_NAME">
                                  <Value field="value" value="NL HIAL"/>
                             </Section>
                        </Section>
                   </Enricher>
         </EnricherParameter>
              <EnricherParameter serviceName="LRS_BusinessDomainObject.lrs.businessDomainObject.domainObjectBuilder.concrete.DomainObjectCreators:createFindClientsAssociatedIdentifersRequestObject" interactionID="PRPA_IN101105CA">
                   <Enricher>
                        <Parameters>
                             <Parameter name="MESSAGE_ID" reference="test"/>
                        </Parameters>
                        <Section path="HEADER">
                             <Section path="RESPONSE_TYPE">
                                  <Value field="value" value="I"/>
                             </Section>
                             <Section path="HL7_STANDARD_VERSION">
                                  <Value field="value" value="HL7V3"/>
                             </Section>
                             <Section path="PROCESSING_CODE">
                                  <Value field="value" value="T"/>
                             </Section>
                             <!--
                             <Section path="PROCESSING_MODE_CODE">
                                  <Value field="value" value="T"/>
                             </Section>
                             -->                         
                             <Section path="DESIRED_ACKNOWLEDGMENT_TYPE">
                                  <Value field="value" value="NE"/>
                             </Section>
                             <Section path="RECEIVER_NETWORK_ADDRESS">
                                  <Value field="value" value="prsunew.moh.hnet.bc.ca"/>
                             </Section>
                             <Section path="RECEIVER_APPLICATION_IDENTIFIER">
                                  <Value field="root" value="2.16.840.1.113883.3.40.5.1"/>
                                  <Value field="extension" value=""/>
                             </Section>
                             <Section path="SENDING_NETWORK_ADDRESS">
                                  <Value field="value" value=""/>
                             </Section>
                             <Section path="SENDING_APPLICATION_IDENTIFIER">
                                  <Value field="root" value="2.16.840.1.113883.3.133.1.3"/>
                                  <Value field="extension" value=""/>
                             </Section>
                             <Section path="SENDING_APPLICATION_NAME">
                                  <Value field="value" value="NL HIAL"/>
                             </Section>
                        </Section>
                   </Enricher>
         </EnricherParameter>
              <EnricherParameter serviceName="LRS_BusinessDomainObject.lrs.businessDomainObject.domainObjectBuilder.concrete.DomainObjectContentEnrichers:enrichPRRequest" interactionID="">
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    <Enricher>
         <Parameters>
              <Parameter name="MESSAGE_IDENTIFIER" reference="test"/>
         </Parameters>
         <Section path="HEADER">
              <Section path="HL7_STANDARD_VERSION">
                   <Value field="value" value="V3PR2"/>
              </Section>
              <!--POS/CPP populated ?-->
              <!--Not sure if this should be set as a variance within EHIP or if we expect the POS/CPP to provide this value-->
              <Section path="PROCESSING_CODE">
                   <Value field="value" value="T"/>
              </Section>
              <!--POS/CPP populated ?-->
              <Section path="PROCESSING_MODE_CODE">
                   <Value field="value" value="T"/>
              </Section>
              <!--POS/CPP populated ?-->
              <Section path="DESIRED_ACKNOWLEDGMENT_TYPE">
                   <Value field="value" value="NE"/>
              </Section>
              <!-- note:We Expect PRS to give us a web service address -->                    
              <!--<Section path="RECEIVER_NETWORK_ADDRESS">
                   <Value field="value" value="_http://PRSServer/svcName"/>
              </Section>
              -->
              <Section path="RECEIVER_APPLICATION_IDENTIFIER[0]">
                   <Value field="root" value="2.16.840.1.113883.3.40.1.14"/>
                   <Value field="extension" value="SIT1"/>
              </Section>
              <!-- note: values of the fields to be provided by PRS -->
              <Section path="RECEIVER_APPLICATION_NAME[0]">
                   <Value field="value" value="receiverAppName"/>
              </Section>
              <!-- note: RECEIVER_ORGANIZATION has an extra trailing space, as in the Excel mapping spreadsheet -->
              <!-- note: values of the fields to be specified by PRS later -->
              <Section path="RECEIVER_AGENT/RECEIVER_ORGANIZATION/RECEIVER_ORGANIZATION_IDENTIFIER[0]">
                   <Value field="root" value="2.16.840.1.113883.3.40.4.1"/>
                   <Value field="extension" value="receiverOrgId"/>
              </Section>
              <Section path="SENDING_APPLICATION_NAME[0]">
                   <Value field="value" value="NLPRSCLNT"/>
              </Section>
              <!-- note: SENDING_ORGANIZATION has an extra trailing space, as in the Excel mapping spreadsheet -->
              <!-- note: values of the fields to be specified by PRS later -->
              <Section path="SENDING_AGENT/SENDING_ORGANIZATION/SENDING_ORGANIZATION_IDENTIFIER[0]">
                   <Value field="root" value="2.16.840.1.113883.4.3.57"/>
                   <Value field="extension" value="3001"/>
              </Section>
              <Section path="PERFORMER/HEALTHCARE_WORKER_IDENTIFIER[0]">
                   <Value field="root" value="2.16.840.1.113883.4.3.57"/>
                   <Value field="extension" value="HIAL_USR"/>
              </Section>          
         </Section>
         <Section path="PAYLOAD">
              <!--<Section path="QUERY_STATUS_CODE">
                   <Value field="value" value="New"/>
              </Section>-->
              <!-- note: AUDIT has an extra trailing space, as in the Excel mapping spreadsheet -->
              <Section path="AUDIT[0]/AUDIT_INFORMATION">
                   <Value field="code" value="LATEST"/>
                   <Value field="codeSystem" value="PRSAuditParameters"/>
              </Section>
              <!-- note: CONFIDENCE has an extra trailing space, as in the Excel mapping spreadsheet -->
              <Section path="CONFIDENCE/CONFIDENCE_VALUE">
                   <Value field="value" value="100"/>
              </Section>
              <!-- note: HISTORY has an extra trailing space, as in the Excel mapping spreadsheet -->
              <Section path="HISTORY/INCLUDE_HISTORY_INDICATOR">
                   <Value field="value" value="false"/>
              </Section>
              <!-- note: JURISDICTION has an extra trailing space, as in the Excel mapping spreadsheet -->
              <Section path="JURISDICTION/JURISDICTION_TYPE">
                   <Value field="value" value="NL"/>
              </Section>
              <!-- note: RESPONSE_OBJECT has an extra trailing space, as in the Excel mapping spreadsheet -->
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[0]">
                   <Value field="code" value="GRS_ADDRESS"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[1]">
                   <Value field="code" value="GRS_ELECTRONIC_ADDRESS"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[2]">
                   <Value field="code" value="GRS_IDENTIFIER"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[3]">
                   <Value field="code" value="GRS_ORGANIZATION_NAME"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[4]">
                   <Value field="code" value="GRS_PERSONAL_NAME"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[5]">
                   <Value field="code" value="GRS_REGISTRY_IDENTIFIER"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[6]">
                   <Value field="code" value="GRS_TELEPHONE"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[7]">
                   <Value field="code" value="PRS_CONDITION"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[8]">
                   <Value field="code" value="PRS_CONFIDENTIALITY_INDICATOR"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[9]">
                   <Value field="code" value="PRS_DEMOGRAPHIC_DETAIL"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[10]">
                   <Value field="code" value="PRS_DISCIPLINARY_ACTION"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[11]">
                   <Value field="code" value="PRS_INFORMATION_ROUTE"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[12]">
                   <Value field="code" value="PRS_NOTE"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[13]">
                   <Value field="code" value="PRS_PROVIDER_CREDENTIAL"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[14]">
                   <Value field="code" value="PRS_PROVIDER_EXPERTISE"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[15]">
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              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[16]">
                   <Value field="code" value="PRS_STATUS"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[17]">
                   <Value field="code" value="PRS_WORK_LOCATION"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[18]">
                   <Value field="code" value="PRS_WORK_LOCATION_ADDRESS"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[19]">
                   <Value field="code" value="PRS_WORK_LOCATION_DETAIL"/>
              </Section>
              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[20]">
                   <Value field="code" value="PRS_WORK_LOCATION_ELECTRONIC_ADDRESS"/>
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              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[21]">
                   <Value field="code" value="PRS_WORK_LOCATION_INFORMATION_ROUTE"/>
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              <Section path="RESPONSE_OBJECT[0]/PROVIDER_QUERY_RESPONSE_OBJECT[22]">
                   <Value field="code" value="PRS_WORK_LOCATION_TELEPHONE"/>
              </Section>
              <!-- note: ROLE_CLASS has an extra trailing space, as in the Excel mapping spreadsheet -->
              <Section path="ROLE_CLASS /ROLE_CLASS_VALUE">
                   <Value field="value" value="LIC"/>
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              <Section path="SORT_CONTROL[0]/SORT_CONTROL_ELEMENT_NAME">
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              <Section path="SORT_CONTROL[0]/SORT_CONTROL_DIRECTION_CODE">
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         </EnricherParameter>
              </EnricherParametersProfileData>
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