Intermittent File, [file], has a different computed hash than specified in manifest error

I have a Click Once application that is deployed on a web server. During development and testing, we see no errors with downloading the files or application launch. A small portion of our users are reporting launch failure and when they send us the log it
always fails on the same file with the error in the title. We cannot reproduce the issue on any of our machines.
We recently had to redo our deployment process as we bought a new signing certificate which uses SHA-256. As a result of not being able to use mage anymore, we moved the publish back into VS 2013 update 3 and create the deployment package with msbuild. Prior
to this restructure of our build, these same users got a different error on this same file. To create the deployment here we were using mage on a computer that had only .NET 4.0 installed. In this case the error stated that the file was not a valid Portable
Executable. The file that causes the error is a 3rd party DLL that we perform no modification to during the build and publish of the application.
I've looked all over this week trying to find a solution or even what could cause this inconsistent behavior but have had no luck so far. Is it most likely that something running on these few users' machines is altering this file during download and causing
the hash mismatch?
Thanks for any insight.

Hello,
To confirm whether this issue could be reproduced, I would recommend you install it in a clean machine to test.
If that still works fine, then maybe you could consider refering to
this blog to see whether changing that setting will help.
If still no luck, then you could refer to
this thread
to see whether that helps.
In addition, if your application is wpf, you could also consider using the way shared in
this thread which uses AfterCompile.
Regards,
Carl
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Intermittent File, [file], has a different computed hash than specified in manifest error

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