Internal HD "Appears to be OK" in Disk Utility but iMac won't boot

I have run Disk Utility on a brand new 27" iMac, recently updated from the original 10.6.4 OS to 10.6.5.
Disk Utility Repair reports that the drive appears to be OK.
But when booting from the internal drive I only make it to the grey screen with a rapidly changing image of the apple, the circle and slash symbol, and a folder with a question mark.

When I originally launched this system, I transferred my user account from a MacBook Pro running 10.6.5. The new iMac was 10.6.4.
The first attempt went ridiculously slow - reporting that it would take upwards of 48 hours. I killed that process, re-installed a clean OS and tried again, and it completed in about 2 hours.
Everything worked OK for about 3 days, then the computer seemed to loose track of it's own boot partition and displayed the 3 rapidly rotating, grey images described above.
I quick-erased the disk and re-installed the OS. Then I manually installed my apps and data. I upgraded from 10.6.4 (the original install DVD version) to 10.6.5.
Everything worked fine for about a week and then the same thing happened again.
I've now re-partitioned the drive and I'm installing a spare, bootable partition this time, just to see what survives if this same thing happens again.

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    2013-09-03 11:19:54 -0700: Checking multi-linked files.
    2013-09-03 11:19:54 -0700: Checking catalog hierarchy.
    2013-09-03 11:20:06 -0700: Checking extended attributes file.
    2013-09-03 11:20:18 -0700: Checking volume bitmap.
    2013-09-03 11:20:19 -0700: Checking volume information.
    2013-09-03 11:20:19 -0700: The volume Steven Polanco Mac appears to be OK.
    2013-09-03 11:20:19 -0700: Volume repair complete.2013-09-03 11:20:19 -0700: Updating boot support partitions for the volume as required.2013-09-03 11:20:29 -0700: Repair tool completed:
    2013-09-03 11:20:29 -0700:
    2013-09-03 11:20:29 -0700:

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