Invoke a command-line from java

Hello!
I wonder if there' s a way to invoke a command or running an .exe file from java code.
10X,
Yaron

Sure, using the exec method in the class Runtime. You have to be careful with it though...
http://www.javaworld.com/javaworld/jw-12-2000/jw-1229-traps.html

Similar Messages

Help Please: How to invoke unix command lines from java?

I have read past topics. Those are really helpful, but I still haven't got my job done. I tried the following:
String command1 = "ls -la > ls1.txt";
Runtime.getRuntime().exec(command1);
String command2 = "tcsh -c ls -la > ls2.txt";
Runtime.getRuntime().exec(command2);
String command4 = "cp keywords.txt copyversion1.txt";
Runtime.getRuntime().exec(command4);
String command5 = "tcsh -c cp keywords.txt copyversion2.txt";
Runtime.getRuntime().exec(command5);
String command6 = "tcsh -c 'cp keywords.txt copyversion3.txt'";
Runtime.getRuntime().exec(command6);
Only "command4" works. Any input will be greatly appreciated.

Thank you very much Gautam. Your solution certainly works. If you don't mind, I would like to ask you (or anybody who is willing to answer) something else. I am trying to run other types of unix command lines as well. I thought that the format you gave would work for everything. But it doesn't seem so:
String command1[] = {"tcsh", "-c", "ls -la > ls1.txt "}; // this works as you suggested
Runtime.getRuntime().exec(command1);
String command12[] = {"tcsh", "-c", "lynx -dump http://www.yahoo.com > webpage.txt"}; //working fine.
Runtime.getRuntime().exec(command12);
String command10[] = {"tcsh", "-c", "ngram-count -text keywords.txt -lm LM10 &"}; //doesn't work
Runtime.getRuntime().exec(command10);
String command[] = {"tcsh", "-c", "/u/drspeech/sun4/bin/ngram-count -text keywords.txt -lm LM0 &"}; // doesn't work
Runtime.getRuntime().exec(command);
String command13[] = {"tcsh", "-c", "ngc -text keywords.txt -lm LM13"}; // doesn't work
Runtime.getRuntime().exec(command13);
String command8 = "ngram-count -text keywords.txt -lm LM8 &"; //doesn't work
Runtime.getRuntime().exec(command8);
String command9 = "/u/drspeech/sun4/bin/ngram-count -text keywords.txt -lm LM9 &"; //doesn't work
Runtime.getRuntime().exec(command9);
I tried "commandd1" and "command12". Those worked fine. No problemo. However, there's someting else I need to get done for my job; that is "command10". But it just didn't work. I thought maybe, it's because "ngram-count" is not part of the standard UNIX commands. So, I thought I might just add another alias for it in the ".cshrc" file and call it "ngc" instead. Then I tried to call the alias "ngc" instead. But it didn't work also. Then I thought, maybe, I should call it by referencing it from its original directory "/u/drspeech/sun4/bin/ngram-count". That didn't work either. I tried a couple of other combinations. None worked. I would really like to see how to solve this.

Execute command line from Java

I have an easy one for you!
I would like to know how I can execute a command line from my java code.
The only thing I want to do is to launch a html page with the default browser in my computer when I press one button of my java application but I dont know wich class I should use to do it. My application will already know what is the file name.
Thank for your help
Eric

Javaworld has some source code that does this:
http://www.javaworld.com/javaworld/javatips/jw-javatip66.html

To execute command line from java programmin

Hi,
I need to execute a command line like ping command from java applications can any help me on this. Thanks in advance.

Runtime.exec
Also read: When Runtime.exec() won't: Navigate yourself around pitfalls related to the Runtime.exec() method

How to include a parameter executing a command line from java??

Hey
I've a problem It's very single for you: this consists in execute a command from java
in this case the command is : runas but I've tried nd is good but I can´t include the password.
This is due to the sintaxis is :
runas /user:127.0.0.1\Administrator cmd
The first command is execute but.. the problem is it show the input for the password.
And the password is not let including in the command line
How can I do that? Please help me is very urgent.
Any help will be very appreciated.
Thanks in advance.
Best Regards.

DAnt. wrote:
what is the name of the correct forum which I must visite? this is because I couln't found the correct forum.You will not find it on the Oracle website
I expect your prompt reply,help me!http://tinyurl.com/yak89nc

Execute external java command line in Java

But I can not get any result ( It does not create file test.svg) . the code is as follow
Runtime.getRuntime().exec("java -jar c:/XSLT/saxon7.jar ../webapps/wfscontroller/gml.xml ../webapps/wfscontroller/SVG.xsl > ../webapps/wfscontroller/test.svg");
If I execute "java -jar c:/XSLT/saxon7.jar ../webapps/wfscontroller/gml.xml ../webapps/wfscontroller/SVG.xsl > ../webapps/wfscontroller/test.svg" in DOS command. it works.
Anybody knows what happened?
Many thanks in advance.

The > is interpreted by the shell. When you use Runtime.exec, you don't go through the shell, you exec the executable directory. So when you exec that command, you're passing ">" as an argument to "java -jar c:/...", and chances are the main() method in that doesn't interpret ">".
So the upshot is you can't use ">", "|", "<", etc., that you can in a shell, with Runtime.exec().
Other options are to run a batch file which invokes that command line.
Or, you can get the standard output from the exec'ed process, and save it to a new file yourself.

Invoking unix shell scripts from java?

Hi,
could someone explain to me how one wuld invoke unix shell scripts from java.
Also, could you invoke Visual Basic scripts from java.
Finally, could you do this from an EJB?
thanks for any help....
sudu

I just posted a snippet of this solution in the topic about widows commands chech it out it works just fine for unix shell scripts.
--Ian

Invoking a BPEL process from java

Hello,
I tried invoking a BPEL process from java. I got the following error:
Error deserializing
return value: java.io.InvalidClassException:
javax.xml.namespace.QName, local class incompatible:
classdesc stream serialVersionUID = ..., local class serialVersionUID = ...
Thank you for helping me.

Hello,
Here is the code I use:
Properties props = new Properties();
Locator locator = null;
props.put("orabpel.platform", "ias_10g" );
props.put("java.naming.factory.initial","com.evermind.server.rmi.RMIInitialContextFactory" );
props.put("java.naming.provider.url","opmn:ormi://host:port/orabpel" );
props.put("java.naming.security.principal", "adminuser" );
props.put("java.naming.security.credentials", "mdp" );
String securityCredentials = "adminuser";
String selectedDomain = "default";
locator = new Locator(selectedDomain,securityCredentials,props);
IBPELProcessHandle procs[] = locator.listProcesses();
The error is:
Exception in thread "main" java.rmi.UnmarshalException: Error deserializing return-value: java.io.InvalidClassException: com.oracle.bpel.client.BPELProcessHandle; local class incompatible: stream classdesc serialVersionUID = 5429682712928177644, local class serialVersionUID = 8176841433835717563
at com.oracle.bpel.client.util.ExceptionUtils.handleServerException(ExceptionUtils.java:82)
at com.oracle.bpel.client.Locator.listProcesses(Locator.java:309)
Thanks for help.
Edited by: 857737 on 14 sept. 2012 10:00

Error Invoking a BPEL process from JAVA

Dear colleagues,
I'm facing a error at execution time when I'm invoking a BPEL process from java. My BPEL process is in a different server than my application. BPEL is running in SOA SUITE 10.1.3.1 and my JAVA application so far is in the embebed OC4J of my Jdveloper 10.1.3.3. I've seen different post with a similiar problem, but there wasn't never a solution!. Here you have the code following by the error:
***************** SOURCE **************************************
Locator locator = new Locator("default", "bpel");
IDeliveryService deliveryService =
(IDeliveryService)locator.lookupService
(IDeliveryService.SERVICE_NAME );
System.out.println(deliveryService.SERVICE_NAME);
System.out.println(deliveryService.LOCAL_SERVICE_NAME);
NormalizedMessage nm = new NormalizedMessage();
nm.addPart("payload", xml );
NormalizedMessage res =
deliveryService.request("LOAD_DB_5", "process", nm);
********************* ERROR ************************************
08/07/23 17:07:21 java.lang.Exception: Fallo al crear el bean "ejb/collaxa/system/DeliveryBean"; la excepción mostrada es: "javax.naming.NameNotFoundException: ejb/collaxa/system/DeliveryBean not found
     at com.evermind.server.rmi.RMIServerContext.lookup(RMIServerContext.java:207)
     at com.evermind.server.ApplicationContext.unprivileged_lookup(ApplicationContext.java:257)
     at com.evermind.server.ApplicationContext.lookup(ApplicationContext.java:197)
     at javax.naming.InitialContext.lookup(InitialContext.java:351)
     at com.oracle.bpel.client.util.BeanRegistry.lookupDeliveryBean(BeanRegistry.java:279)
     at com.oracle.bpel.client.delivery.DeliveryService.getDeliveryBean(DeliveryService.java:250)
     at com.oracle.bpel.client.delivery.DeliveryService.request(DeliveryService.java:83)
     at com.oracle.bpel.client.delivery.DeliveryService.request(DeliveryService.java:53)
     at amaos.xml.loadData.LoadXml.loadData(LoadXml.java:31)
     at amaos.view.beans.FileProcessor.fileUploaded(FileProcessor.java:159)
     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
     at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
     at java.lang.reflect.Method.invoke(Method.java:585)
     at com.sun.faces.el.MethodBindingImpl.invoke(MethodBindingImpl.java:146)
     at oracle.adf.view.faces.component.UIXComponentBase.__broadcast(UIXComponentBase.java:1087)
     at oracle.adf.view.faces.component.UIXEditableValue.broadcast(UIXEditableValue.java:247)
     at javax.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:269)
     at javax.faces.component.UIViewRoot.processValidators(UIViewRoot.java:363)
     at com.sun.faces.lifecycle.ProcessValidationsPhase.execute(ProcessValidationsPhase.java:98)
     at com.sun.faces.lifecycle.LifecycleImpl.phase(LifecycleImpl.java:245)
     at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:110)
     at javax.faces.webapp.FacesServlet.service(FacesServlet.java:213)
     at com.evermind.server.http.ResourceFilterChain.doFilter(ResourceFilterChain.java:65)
     at amaos.view.UploadQuestionary.doFilter(UploadQuestionary.java:24)
     at com.evermind.server.http.EvermindFilterChain.doFilter(EvermindFilterChain.java:15)
     at amaos.view.UploadQuestionary.doFilter(UploadQuestionary.java:24)
     at com.evermind.server.http.EvermindFilterChain.doFilter(EvermindFilterChain.java:17)
     at oracle.adf.model.servlet.ADFBindingFilter.doFilter(ADFBindingFilter.java:162)
     at com.evermind.server.http.EvermindFilterChain.doFilter(EvermindFilterChain.java:17)
     at oracle.adfinternal.view.faces.webapp.AdfFacesFilterImpl._invokeDoFilter(AdfFacesFilterImpl.java:228)
     at oracle.adfinternal.view.faces.webapp.AdfFacesFilterImpl._doFilterImpl(AdfFacesFilterImpl.java:197)
     at oracle.adfinternal.view.faces.webapp.AdfFacesFilterImpl.doFilter(AdfFacesFilterImpl.java:171)
     at oracle.adf.view.faces.webapp.AdfFacesFilter.doFilter(AdfFacesFilter.java:103)
     at com.evermind.server.http.ServletRequestDispatcher.invoke(ServletRequestDispatcher.java:621)
     at com.evermind.server.http.ServletRequestDispatcher.forwardInternal(ServletRequestDispatcher.java:370)
     at com.evermind.server.http.HttpRequestHandler.doProcessRequest(HttpRequestHandler.java:871)
     at com.evermind.server.http.HttpRequestHandler.processRequest(HttpRequestHandler.java:453)
     at com.evermind.server.http.HttpRequestHandler.serveOneRequest(HttpRequestHandler.java:221)
     at com.evermind.server.http.HttpRequestHandler.run(HttpRequestHandler.java:122)
     at com.evermind.server.http.HttpRequestHandler.run(HttpRequestHandler.java:111)
     at oracle.oc4j.network.ServerSocketReadHandler$SafeRunnable.run(ServerSocketReadHandler.java:260)
     at oracle.oc4j.network.ServerSocketAcceptHandler.procClientSocket(ServerSocketAcceptHandler.java:239)
     at oracle.oc4j.network.ServerSocketAcceptHandler.access$700(ServerSocketAcceptHandler.java:34)
     at oracle.oc4j.network.ServerSocketAcceptHandler$AcceptHandlerHorse.run(ServerSocketAcceptHandler.java:880)
     at com.evermind.util.ReleasableResourcePooledExecutor$MyWorker.run(ReleasableResourcePooledExecutor.java:303)
     at java.lang.Thread.run(Thread.java:595)
08/07/23 17:07:21      at com.oracle.bpel.client.util.BeanRegistry.lookupDeliveryBean(BeanRegistry.java:293)
08/07/23 17:07:21      at com.oracle.bpel.client.delivery.DeliveryService.getDeliveryBean(DeliveryService.java:250)
08/07/23 17:07:21      at com.oracle.bpel.client.delivery.DeliveryService.request(DeliveryService.java:83)
08/07/23 17:07:21      at com.oracle.bpel.client.delivery.DeliveryService.request(DeliveryService.java:53)
08/07/23 17:07:21      at amaos.xml.loadData.LoadXml.loadData(LoadXml.java:31)
08/07/23 17:07:21      at amaos.view.beans.FileProcessor.fileUploaded(FileProcessor.java:159)
08/07/23 17:07:21      at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
08/07/23 17:07:21      at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
08/07/23 17:07:21      at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
08/07/23 17:07:21      at java.lang.reflect.Method.invoke(Method.java:585)
08/07/23 17:07:21      at com.sun.faces.el.MethodBindingImpl.invoke(MethodBindingImpl.java:146)
08/07/23 17:07:21      at oracle.adf.view.faces.component.UIXComponentBase.__broadcast(UIXComponentBase.java:1087)
08/07/23 17:07:21      at oracle.adf.view.faces.component.UIXEditableValue.broadcast(UIXEditableValue.java:247)
08/07/23 17:07:21      at javax.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:269)
08/07/23 17:07:21      at javax.faces.component.UIViewRoot.processValidators(UIViewRoot.java:363)
08/07/23 17:07:21      at com.sun.faces.lifecycle.ProcessValidationsPhase.execute(ProcessValidationsPhase.java:98)
08/07/23 17:07:21      at com.sun.faces.lifecycle.LifecycleImpl.phase(LifecycleImpl.java:245)
08/07/23 17:07:21      at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:110)
08/07/23 17:07:21      at javax.faces.webapp.FacesServlet.service(FacesServlet.java:213)
08/07/23 17:07:21      at com.evermind.server.http.ResourceFilterChain.doFilter(ResourceFilterChain.java:65)
08/07/23 17:07:21      at amaos.view.UploadQuestionary.doFilter(UploadQuestionary.java:24)
08/07/23 17:07:21      at com.evermind.server.http.EvermindFilterChain.doFilter(EvermindFilterChain.java:15)
08/07/23 17:07:21      at amaos.view.UploadQuestionary.doFilter(UploadQuestionary.java:24)
08/07/23 17:07:21      at com.evermind.server.http.EvermindFilterChain.doFilter(EvermindFilterChain.java:17)
08/07/23 17:07:21      at oracle.adf.model.servlet.ADFBindingFilter.doFilter(ADFBindingFilter.java:162)
08/07/23 17:07:21      at com.evermind.server.http.EvermindFilterChain.doFilter(EvermindFilterChain.java:17)
08/07/23 17:07:21      at oracle.adfinternal.view.faces.webapp.AdfFacesFilterImpl._invokeDoFilter(AdfFacesFilterImpl.java:228)
08/07/23 17:07:21      at oracle.adfinternal.view.faces.webapp.AdfFacesFilterImpl._doFilterImpl(AdfFacesFilterImpl.java:197)
08/07/23 17:07:21      at oracle.adfinternal.view.faces.webapp.AdfFacesFilterImpl.doFilter(AdfFacesFilterImpl.java:171)
08/07/23 17:07:21      at oracle.adf.view.faces.webapp.AdfFacesFilter.doFilter(AdfFacesFilter.java:103)
08/07/23 17:07:21      at com.evermind.server.http.ServletRequestDispatcher.invoke(ServletRequestDispatcher.java:621)
08/07/23 17:07:21      at com.evermind.server.http.ServletRequestDispatcher.forwardInternal(ServletRequestDispatcher.java:370)
08/07/23 17:07:21      at com.evermind.server.http.HttpRequestHandler.doProcessRequest(HttpRequestHandler.java:871)
08/07/23 17:07:21      at com.evermind.server.http.HttpRequestHandler.processRequest(HttpRequestHandler.java:453)
08/07/23 17:07:21      at com.evermind.server.http.HttpRequestHandler.serveOneRequest(HttpRequestHandler.java:221)
08/07/23 17:07:21      at com.evermind.server.http.HttpRequestHandler.run(HttpRequestHandler.java:122)
08/07/23 17:07:21      at com.evermind.server.http.HttpRequestHandler.run(HttpRequestHandler.java:111)
08/07/23 17:07:21      at oracle.oc4j.network.ServerSocketReadHandler$SafeRunnable.run(ServerSocketReadHandler.java:260)
08/07/23 17:07:21      at oracle.oc4j.network.ServerSocketAcceptHandler.procClientSocket(ServerSocketAcceptHandler.java:239)
08/07/23 17:07:21      at oracle.oc4j.network.ServerSocketAcceptHandler.access$700(ServerSocketAcceptHandler.java:34)
08/07/23 17:07:21      at oracle.oc4j.network.ServerSocketAcceptHandler$AcceptHandlerHorse.run(ServerSocketAcceptHandler.java:880)
08/07/23 17:07:21      at com.evermind.util.ReleasableResourcePooledExecutor$MyWorker.run(ReleasableResourcePooledExecutor.java:303)
08/07/23 17:07:21      at java.lang.Thread.run(Thread.java:595)
Any help is welcome!
Thanks

Hi
You are trying to create a locator object with default values which does not work at all times.Use Locator("default",prop) where prop is a properties object and set the values according to your environment.
The following properties values must be set
Properties props=new Properties();
props.setProperty("orabpel.platform","ias_10g");
props.setProperty("java.naming.factory.initial","com.evermind.server.rmi.RMIInitialContextFactory");
props.setProperty("java.naming.provider.url", "url value");
props.setProperty("java.naming.security.principal","domain user name");
props.setProperty("java.naming.security.credentials","password");
props.setProperty("dedicated.rmicontext", "true");

Invoke a bpel process from Java API

All,
I got an error when I tried to invoke a bpel process from java api. Can anyone help?
I got the following errors:
<2007-08-14 10:10:11,986> <ERROR> <default.collaxa.cube.xml> com.oracle.bpel.client.BPELFault: faultName: {{http://schemas.xmlsoap.org/ws/2003/03/business-process/}selectionFailure}
messageType: {null}
parts: {{summary=oracle.xml.parser.v2.XMLElement@da5c23}}
<2007-08-14 10:10:12,158> <ERROR> <default.collaxa.cube.xml> <XMLElement__CXPM::save> ORABPEL-09219
Cannot save element.
An attempt to save the element "EssayScoringDetailsCollection" has failed. Because this element is not a root element and for some reason the scope has reference to this element, scope should have references ONLY to root elements.
     at com.collaxa.cube.xml.dom.XMLElement__CXPM.save(XMLElement__CXPM.java:82)
     at com.collaxa.cube.engine.core.PersistenceService.save(PersistenceService.java:259)
     at com.collaxa.cube.engine.types.bpel.CXMessageVariable__CXPM.save(CXMessageVariable__CXPM.java:182)
     at com.collaxa.cube.engine.core.PersistenceService.save(PersistenceService.java:259)
     at com.collaxa.cube.engine.persist.BaseScope__CXPM.save(BaseScope__CXPM.java:170)
     at com.collaxa.cube.engine.persist.Scope__CXPM.save(Scope__CXPM.java:97)
     at com.collaxa.cube.engine.core.PersistenceService.save(PersistenceService.java:259)
     at com.collaxa.cube.engine.enc.ScopeContextSerializer.serializeContext(ScopeContextSerializer.java:587)
     at com.collaxa.cube.engine.enc.ScopeContextSerializer.toBin(ScopeContextSerializer.java:99)
     at com.collaxa.cube.engine.adaptors.common.BaseCubeInstancePersistenceAdaptor.store(BaseCubeInstancePersistenceAdaptor.java:543)
     at com.collaxa.cube.engine.adaptors.olite.CubeInstancePersistenceAdaptor.store(CubeInstancePersistenceAdaptor.java:387)
     at com.collaxa.cube.engine.data.CubeInstancePersistenceMgr.store(CubeInstancePersistenceMgr.java:367)
     at com.collaxa.cube.engine.CubeEngine.store(CubeEngine.java:5008)
     at com.collaxa.cube.engine.CubeEngine.endRequest(CubeEngine.java:5266)
     at com.collaxa.cube.engine.CubeEngine.createAndInvoke(CubeEngine.java:1083)
     at com.collaxa.cube.engine.ejb.impl.CubeEngineBean.createAndInvoke(CubeEngineBean.java:132)
     at com.collaxa.cube.engine.ejb.impl.CubeEngineBean.syncCreateAndInvoke(CubeEngineBean.java:161)
     at sun.reflect.GeneratedMethodAccessor158.invoke(Unknown Source)
     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
     at java.lang.reflect.Method.invoke(Method.java:585)
     at com.evermind.server.ejb.interceptor.joinpoint.EJBJoinPointImpl.invoke(EJBJoinPointImpl.java:35)
     at com.evermind.server.ejb.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:119)
     at com.evermind.server.ejb.interceptor.system.DMSInterceptor.invoke(DMSInterceptor.java:52)
     at com.evermind.server.ejb.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:119)
     at com.evermind.server.ejb.interceptor.system.JAASInterceptor$1.run(JAASInterceptor.java:31)
     at java.security.AccessController.doPrivileged(Native Method)
     at javax.security.auth.Subject.doAs(Subject.java:396)
     at com.evermind.server.ThreadState.runAs(ThreadState.java:622)
     at com.evermind.server.ejb.interceptor.system.JAASInterceptor.invoke(JAASInterceptor.java:34)
     at com.evermind.server.ejb.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:119)
     at com.evermind.server.ejb.interceptor.system.TxRequiresNewInterceptor.invoke(TxRequiresNewInterceptor.java:52)
     at com.evermind.server.ejb.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:119)
     at com.evermind.server.ejb.interceptor.system.DMSInterceptor.invoke(DMSInterceptor.java:52)
     at com.evermind.server.ejb.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:119)
     at com.evermind.server.ejb.InvocationContextPool.invoke(InvocationContextPool.java:55)
     at com.evermind.server.ejb.StatelessSessionEJBObject.OC4J_invokeMethod(StatelessSessionEJBObject.java:87)
     at CubeEngineBean_LocalProxy_4bin6i8.syncCreateAndInvoke(Unknown Source)
     at com.collaxa.cube.engine.delivery.DeliveryHandler.initialRequestAnyType(DeliveryHandler.java:499)
     at com.collaxa.cube.engine.delivery.DeliveryHandler.initialRequest(DeliveryHandler.java:451)
     at com.collaxa.cube.engine.delivery.DeliveryHandler.request(DeliveryHandler.java:125)
     at com.collaxa.cube.ejb.impl.DeliveryBean.request(DeliveryBean.java:95)
     at sun.reflect.GeneratedMethodAccessor157.invoke(Unknown Source)
     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
     at java.lang.reflect.Method.invoke(Method.java:585)
     at com.evermind.server.ejb.interceptor.joinpoint.EJBJoinPointImpl.invoke(EJBJoinPointImpl.java:35)
     at com.evermind.server.ejb.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:119)
     at com.evermind.server.ejb.interceptor.system.DMSInterceptor.invoke(DMSInterceptor.java:52)
     at com.evermind.server.ejb.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:119)
     at com.evermind.server.ejb.interceptor.system.JAASInterceptor$1.run(JAASInterceptor.java:31)
     at java.security.AccessController.doPrivileged(Native Method)
     at javax.security.auth.Subject.doAs(Subject.java:396)
     at com.evermind.server.ThreadState.runAs(ThreadState.java:622)
     at com.evermind.server.ejb.interceptor.system.JAASInterceptor.invoke(JAASInterceptor.java:34)
     at com.evermind.server.ejb.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:119)
     at com.evermind.server.ejb.interceptor.system.TxRequiredInterceptor.invoke(TxRequiredInterceptor.java:50)
     at com.evermind.server.ejb.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:119)
     at com.evermind.server.ejb.interceptor.system.DMSInterceptor.invoke(DMSInterceptor.java:52)
     at com.evermind.server.ejb.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:119)
     at com.evermind.server.ejb.InvocationContextPool.invoke(InvocationContextPool.java:55)
     at com.evermind.server.ejb.StatelessSessionEJBObject.OC4J_invokeMethod(StatelessSessionEJBObject.java:87)
     at DeliveryBean_RemoteProxy_4bin6i8.request(Unknown Source)
     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
     at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
     at java.lang.reflect.Method.invoke(Method.java:585)
     at com.evermind.server.rmi.RmiMethodCall.run(RmiMethodCall.java:53)
     at com.evermind.util.ReleasableResourcePooledExecutor$MyWorker.run(ReleasableResourcePooledExecutor.java:303)
     at java.lang.Thread.run(Thread.java:595)
<2007-08-14 10:10:12,158> <ERROR> <default.collaxa.cube> <BaseCubeSessionBean::logError> Error while invoking bean "cube engine": Cannot serialize DOM element.
Failed to serialize the DOM element "EssayScoringDetailsCollection" to binary format. The exception reported is Cannot save element.
An attempt to save the element "EssayScoringDetailsCollection" has failed. Because this element is not a root element and for some reason the scope has reference to this element, scope should have references ONLY to root elements.
ORABPEL-09221
Cannot serialize DOM element.
I did the following in my java application:
//create the BPEL locator object to find the BPEL process
Locator locator = new Locator("default", "welcome1", jndi);
//just for fun, display all the available BPEL processes
/*for(IBPELProcessHandle ibph : locator.listProcesses()) {
System.out.println(ibph.getProcessModel());
IDeliveryService deliveryService = (IDeliveryService)locator.lookupService(IDeliveryService.SERVICE_NAME);
//construct the normalized message
NormalizedMessage nm = new NormalizedMessage();
String xml = "<ns1:PromptsCollection xmlns:ns1='http://xmlns.oracle.com/pcbpel/adapter/db/top/DBSelectPrompt'>" +
"<ns1:Prompts>" +
"<ns1:promptId>" pr.getPromptId()"</ns1:promptId>" +
"<ns1:calibrated>"+pr.getCalibrated().toString()+"</ns1:calibrated>" +
"<ns1:ibn>"+pr.getIbn()+"</ns1:ibn>" +
"<ns1:promptType>"+pr.getPromptType()+"</ns1:promptType>" +
"<ns1:promptsetId>"+pr.getPromptset().getPromptsetId()+"</ns1:promptsetId>" +
"<ns1:vantagePromptId>"+pr.getVantagePromptId()+"</ns1:vantagePromptId>" +
"<ns1:promptKey>"+pr.getPromptKey()+"</ns1:promptKey>" +
"<ns1:holdStatusCode>"+pr.getHoldStatus()+"</ns1:holdStatusCode>" +
"<ns1:holdEssayTotalCount>"+pr.getHoldEssayTotalCount()+"</ns1:holdEssayTotalCount>" +
"<ns1:holdEssayCurrentCount>"+pr.getHoldEssayCurrentCount()+"</ns1:holdEssayCurrentCount>" +
"<ns1:approvedStatus>"+pr.getApprovedStatus()+"</ns1:approvedStatus>" +
"<ns1:rowChangeDate>"+pr.getRowChangeDate()+"</ns1:rowChangeDate>" + "<ns1:programId>1001</ns1:programId>" +
"<ns1:programId></ns1:programId>" +
"<ns1:characterCountMin>"+pr.getCharacterCountMin()+"</ns1:characterCountMin>" +
"<ns1:durationMin>"+pr.getDurationMin()+"</ns1:durationMin>" +
"<ns1:rangeFindingFlag>"+pr.getRangeFindingFlag()+"</ns1:rangeFindingFlag>" +
"<ns1:durationFlag></ns1:durationFlag>" +
"<ns1:characterCountMax>"+pr.getCharacterCountMax().intValue()+"</ns1:characterCountMax>" +
"<ns1:durationMax>"+pr.getDurationMax().intValue()+"</ns1:durationMax>" +
"<ns1:rangeCount>"+ rangeCount+"</ns1:rangeCount>" +
"</ns1:Prompts>" +
"</ns1:PromptsCollection>" ;
/*String xml = "<ns1:PromptsCollection xmlns:ns1='http://xmlns.oracle.com/pcbpel/adapter/db/top/DBSelectPrompt'>" +
"<ns1:Prompts>" +
"<ns1:promptId>" pr.getPromptId().toString()"</ns1:promptId>" +
"<ns1:calibrated>"+pr.getCalibrated().toString()+"</ns1:calibrated>" +
"<ns1:ibn>"+pr.getIbn()+"</ns1:ibn>" +
"<ns1:promptType>"+pr.getPromptType()+"</ns1:promptType>" +
"<ns1:promptsetId>"+pr.getPromptset().getPromptsetId().toString()+"</ns1:promptsetId>" +
"<ns1:vantagePromptId>"+pr.getVantagePromptId()+"</ns1:vantagePromptId>" +
"<ns1:promptKey>"+pr.getPromptKey()+"</ns1:promptKey>" +
"<ns1:holdStatusCode>"+pr.getHoldStatus()+"</ns1:holdStatusCode>" +
"<ns1:holdEssayTotalCount>"+pr.getHoldEssayTotalCount()+"</ns1:holdEssayTotalCount>" +
"<ns1:holdEssayCurrentCount>"+pr.getHoldEssayCurrentCount()+"</ns1:holdEssayCurrentCount>" +
"<ns1:approvedStatus>"+pr.getApprovedStatus()+"</ns1:approvedStatus>" +
"<ns1:rowChangeDate>"+pr.getRowChangeDate()+"</ns1:rowChangeDate>" +
"<ns1:programId></ns1:programId>" +
"<ns1:characterCountMin>"+pr.getCharacterCountMin()+"</ns1:characterCountMin>" +
"<ns1:durationMin>"+pr.getDurationMin()+"</ns1:durationMin>" +
"<ns1:rangeFindingFlag>"+pr.getRangeFindingFlag()+"</ns1:rangeFindingFlag>" +
"<ns1:durationFlag></ns1:durationFlag>" +
"<ns1:characterCountMax>"+pr.getCharacterCountMax()+"</ns1:characterCountMax>" +
"<ns1:durationMax>"+pr.getDurationMax()+"</ns1:durationMax>" +
"<ns1:rangeCount>"+pr.getRangeCount()+"</ns1:rangeCount>" +
"</ns1:Prompts>" +
"</ns1:PromptsCollection>" ; */
//add the payload part to the message with the xml variable
nm.addPart("payload", xml.trim());
//make the call to the BPEL process
NormalizedMessage response = deliveryService.request("UpdatePromptStatus", "process",nm);
Map payload = response.getPayload();

I'm getting all of the same errors, but in a slightly different situation.
<2007-08-23 09:11:46,086> <ERROR> <default.collaxa.cube.xml> com.oracle.bpel.client.BPELFault: faultName: {{http://schemas.xmlsoap.org/ws/2003/03/business-process/}selectionFailure}
messageType: {null}
parts: {{summary=oracle.xml.parser.v2.XMLElement@d454cf}}
<2007-08-23 09:11:46,633> <ERROR> <default.collaxa.cube.xml> <XMLElement__CXPM::save> ORABPEL-09219
Cannot save element.
An attempt to save the element "SfCaseCollection" has failed. Because this element is not a root element and for some reason the scope has reference to this element, scope should have references ONLY to root elements.
     at com.collaxa.cube.xml.dom.XMLElement__CXPM.save(XMLElement__CXPM.java:82)
     at com.collaxa.cube.engine.core.PersistenceService.save(PersistenceService.java:259)
     at com.collaxa.cube.engine.types.bpel.CXMessageVariable__CXPM.save(CXMessageVariable__CXPM.java:182)
     at com.collaxa.cube.engine.core.PersistenceService.save(PersistenceService.java:259)
     at com.collaxa.cube.engine.persist.BaseScope__CXPM.save(BaseScope__CXPM.java:170)
     at com.collaxa.cube.engine.persist.Scope__CXPM.save(Scope__CXPM.java:97)
     at com.collaxa.cube.engine.core.PersistenceService.save(PersistenceService.java:259)
     at com.collaxa.cube.engine.enc.ScopeContextSerializer.serializeContext(ScopeContextSerializer.java:587)
     at com.collaxa.cube.engine.enc.ScopeContextSerializer.toBin(ScopeContextSerializer.java:99)
     at com.collaxa.cube.engine.adaptors.common.BaseCubeInstancePersistenceAdaptor.store(BaseCubeInstancePersistenceAdaptor.java:543)
     at com.collaxa.cube.engine.adaptors.oracle.CubeInstancePersistenceAdaptor.store(CubeInstancePersistenceAdaptor.java:83)
     at com.collaxa.cube.engine.data.CubeInstancePersistenceMgr.store(CubeInstancePersistenceMgr.java:367)
     at com.collaxa.cube.engine.CubeEngine.store(CubeEngine.java:5008)
     at com.collaxa.cube.engine.CubeEngine.endRequest(CubeEngine.java:5266)
     at com.collaxa.cube.engine.CubeEngine.handleWorkItem(CubeEngine.java:1771)
     at com.collaxa.cube.engine.ejb.impl.CubeEngineBean.handleWorkItem(CubeEngineBean.java:306)
     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
     at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
     at java.lang.reflect.Method.invoke(Method.java:585)
     at com.evermind.server.ejb.interceptor.joinpoint.EJBJoinPointImpl.invoke(EJBJoinPointImpl.java:35)
     at com.evermind.server.ejb.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:119)
     at com.evermind.server.ejb.interceptor.system.DMSInterceptor.invoke(DMSInterceptor.java:52)
     at com.evermind.server.ejb.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:119)
     at com.evermind.server.ejb.interceptor.system.JAASInterceptor$1.run(JAASInterceptor.java:31)
     at java.security.AccessController.doPrivileged(Native Method)
     at javax.security.auth.Subject.doAs(Subject.java:396)
     at com.evermind.server.ThreadState.runAs(ThreadState.java:622)
     at com.evermind.server.ejb.interceptor.system.JAASInterceptor.invoke(JAASInterceptor.java:34)
     at com.evermind.server.ejb.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:119)
     at com.evermind.server.ejb.interceptor.system.TxRequiredInterceptor.invoke(TxRequiredInterceptor.java:50)
     at com.evermind.server.ejb.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:119)
     at com.evermind.server.ejb.interceptor.system.DMSInterceptor.invoke(DMSInterceptor.java:52)
     at com.evermind.server.ejb.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:119)
     at com.evermind.server.ejb.InvocationContextPool.invoke(InvocationContextPool.java:55)
     at com.evermind.server.ejb.StatelessSessionEJBObject.OC4J_invokeMethod(StatelessSessionEJBObject.java:87)
     at CubeEngineBean_LocalProxy_4bin6i8.handleWorkItem(Unknown Source)
     at com.collaxa.cube.engine.dispatch.message.instance.PerformMessageHandler.handle(PerformMessageHandler.java:45)
     at com.collaxa.cube.engine.dispatch.DispatchHelper.handleMessage(DispatchHelper.java:138)
     at com.collaxa.cube.engine.dispatch.BaseScheduledWorker.process(BaseScheduledWorker.java:70)
     at com.collaxa.cube.engine.ejb.impl.WorkerBean.onMessage(WorkerBean.java:86)
     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
     at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
     at java.lang.reflect.Method.invoke(Method.java:585)
     at com.evermind.server.ejb.interceptor.joinpoint.EJBJoinPointImpl.invoke(EJBJoinPointImpl.java:35)
     at com.evermind.server.ejb.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:119)
     at com.evermind.server.ejb.interceptor.system.DMSInterceptor.invoke(DMSInterceptor.java:52)
     at com.evermind.server.ejb.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:119)
     at com.evermind.server.ejb.interceptor.system.SetContextActionInterceptor.invoke(SetContextActionInterceptor.java:44)
     at com.evermind.server.ejb.interceptor.InvocationContextImpl.proceed(InvocationContextImpl.java:119)
     at com.evermind.server.ejb.InvocationContextPool.invoke(InvocationContextPool.java:55)
     at oracle.j2ee.connector.messageinflow.MessageEndpointImpl.OC4J_invokeMethod(MessageEndpointImpl.java:297)
     at WorkerBean_EndPointProxy_4bin6i8.onMessage(Unknown Source)
     at oracle.j2ee.ra.jms.generic.WorkConsumer.run(WorkConsumer.java:266)
     at oracle.j2ee.connector.work.WorkWrapper.runTargetWork(WorkWrapper.java:242)
     at oracle.j2ee.connector.work.WorkWrapper.doWork(WorkWrapper.java:215)
     at oracle.j2ee.connector.work.WorkWrapper.run(WorkWrapper.java:190)
     at EDU.oswego.cs.dl.util.concurrent.PooledExecutor$Worker.run(PooledExecutor.java:814)
     at java.lang.Thread.run(Thread.java:595)
Did you ever find a solution to your problem?
My situation is that I'm running a process that grabs data from a salesforce.com web service and dumps some of the data back into my local database. The process croaks after processing 850 or so records. I have also increased my PermSize memory to 512M.
Any ideas why all of a sudden after processing that many records it would stop working?
Thanks,
Adam

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