Is the RemoteApp collection the way to go?

Hello all,
I just signed up for a 30 day trial of Azure - have set-up one virtual machine - running Windows Server 2008 R2 and SQL Server 2008 R2.
We currently have two virtual machines hosted with a company - we are not renewing the contract and are looking at other options - I heard that Microsoft does this and here we are!
So we want to possibly see if we can get away with one server - small company, not a lot of $$.
The server has two purposes:  
1)  SQL Database for custom application - users access via simple *.exe on their computer - pointing to server's IP address/custom port
2)  QuickBooks Enterprise - which users currently access via RDS or RemoteApp  
**NOTE:  both programs need to be run in the same memory space as there is a custom interface done by our developer.  For example if staff only want to use QuickBooks they'll access via RemoteApp.  If they need to do a transfer of data between
the custom database program and QuickBooks they'll do a RD connection to the server - launch both apps from the desktop as they need to run at the same time for the data transfer - and do the transfer.
The database setup, access, etc. should be straight forward - I am just not sure how the RemoteApp side works with Azure.  We have approx 10 users - do we have to create this RemoteApp collection?  Is it not possible to set-up RemoteApp directly
on the server?  I've added that as a server role and of course it's prompting about licensing - which I could easily purchase from our software vendor if that is less expensive/easier than doing the Azure RemoteApp side of things?  And again my concern
is about these two programs having to run in the same memory space - side by side.
Yes I'm completely new to Azure and taking this trial time to really dig into things but getting help with this would really  help me to move forward with things.  Thanks so much!  :-)

SamsonRules,
Great question, there are two deployments methods for Azure RemoteApp, they are Cloud and Hybrid, and depending on your needs one or the other may or may not satisfy your requirements. 
I’m not familiar with QuickBooks Enterprise and assume that QuickBook clients can communicate with the Quickbooks server over the internet or WAN and don’t need to be on the same network, correct? 
If so then Cloud deployment will work with your database hosted in SQL Azure or on Azure IaaS instance with SQL installed. 
If not, then Hybrid deployment is your only option.
Here’s what I would do, since you already have an Azure IaaS deployment, I’d simply create a Cloud deployment, launch IE, open File Explorer (just type c:\ in the address bar), when file explorer
launchs copy the simple*.exe app to file system like the desktop using copy/paste, then launch the simple*.exe app and connect to your Azure IaaS deployment of QuickBooks. 
If it works then you can go the route of creating a custom image that includes the simple*.exe app and publish to users. 
It’s a bit of a trick validation but works great because you have a simple*.exe app that does not require full installation with Admin rights. 

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