Manageing indexes in owa_perf?

The Oracle Application Server performance monitoring technical note recommends running the data load script with the -nomaintain_indexes option.
What does this actually do? Are the indexes updated afterwards?
I notice that loading data is fairly quick but that generating the reports takes all day.

You are correct.
I process all files once a week via batch file. The batch file also generates the reports immediately after loading the data.
If I load the data without maintaining the indexes, how long does it take, if ever, for the indexes to update? Should I wait to generate the reports? Should I rebuild the indexes?
If I rebuild the indexes, would that take as long as loading the data with index maintenance on?

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