Mkinitcpio upgrade: "exists in filesystem" error

When running pacman -Syu, I get the following errors:
error: failed to commit transaction (conflicting files)
mkinitcpio: /lib/initcpio/hooks/keymap exists in filesystem
mkinitcpio: /lib/initcpio/hooks/udev exists in filesystem
mkinitcpio: /lib/initcpio/install/keymap exists in filesystem
mkinitcpio: /lib/initcpio/install/udev exists in filesystem
mkinitcpio: /lib/initcpio/udev/load-modules.sh exists in filesystem
Errors occurred, no packages were upgraded.
error: pacman exited with an error (256)
I assume this has to do with the changes to mkinitcpio mentioned on the front page
I have earlier modified the HOOKS line in /etc/mkinitcpio.conf
HOOKS="base udev autodetect pata scsi sata keymap uresume filesystems"
So, what do I do? Force the upgrade?

I'm getting the same error on yaourt -Syu (also occurs when trying to upgrade mkinitcpio)
error: failed to commit transaction (conflicting files)
mkinitcpio: /lib/initcpio/hooks/keymap exists in filesystem
mkinitcpio: /lib/initcpio/hooks/udev exists in filesystem
mkinitcpio: /lib/initcpio/install/keymap exists in filesystem
mkinitcpio: /lib/initcpio/install/udev exists in filesystem
mkinitcpio: /lib/initcpio/udev/load-modules.sh exists in filesystem
Errors occurred, no packages were upgraded.
The upgrade is from mkinitcpio 0.5.30-1 to 0.6.2-1 and to mkinitcpio-busybox 1.15.3-5 (new package)
I'm running x86_64. I can update other packages without problems.
Edit: I forced the upgrade of mkinitcpio and rebuilt the kernel image. The new image doesn't work (it can't find /sbin/udevd, which does exist). If I remove klibc-*, the kernel won't build at all (Can't build hook udev).
Booting the new kernel image:
:: Loading Initramfs
:: Starting udev...
/init: line 24: /sbin/udevd: not found
done.
:: Running Hook [udev]
:: Loading udev... /init: line 11: /sbin/udevd: not found
/init: line 11: sbin/udevadm: not found
/init: line 11: sbin/udevadm: not found
done.
Waiting 10 seconds for device /dev/disk/by-uuid/(...)...
\nRoot device 'dev/disk/by-uuid/(...)' doesn't exist. Attempting to create it.
ERROR: Unable to determine major/minor number of root device '/dev/disk/by-uuid/(...)'.
You are being dropped to a recovery shell
Type 'exit' to try and continue booting
/bin/sh: can't access tty; job control turned off
[ramfs /]# _
I can't do anything with the recovery console using my usb keyboard.
/sbin/udevd does exist.
Last edited by gopher292 (2010-02-18 00:30:37)

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    libkate: /usr/share/doc/libkate/html/format_0x01.html exists in filesystem
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    libkate: /usr/share/doc/libkate/html/format_0x82.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/format_0x83.html exists in filesystem
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    libkate: /usr/share/doc/libkate/html/globals_0x64.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_0x65.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_0x66.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_0x67.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_0x68.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_0x69.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_0x6c.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_0x6d.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_0x6f.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_0x70.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_0x72.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_0x73.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_0x74.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_0x75.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_0x76.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_0x77.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_defs.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_enum.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_eval.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/globals_func.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/granule.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/group__comments.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/group__decoding.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/group__encoding.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/group__font.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/group__granule.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/group__high.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/group__info.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/group__metadata.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/group__misc.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/group__ogg__decode.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/group__ogg__encode.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/group__packet.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/group__text.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/group__tracker.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/group__version.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/high_8c-example.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/index.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate_8h-source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate_8h.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate_8h_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__bitwise_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__bitwise_8h_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__comment_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__config_8h-source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__config_8h_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__decode_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__decode__state_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__decode__state_8h_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__encode_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__encode__state_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__encode__state_8h_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__event_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__font_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__fp_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__fp_8h_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__granule_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__high_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__info_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__internal_8h_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__motion_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__ogg_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__packet_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__rle_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__rle_8h_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__text_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/kate__tracker_8c_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/modules.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/oggkate_8h-source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/oggkate_8h.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/oggkate_8h_source.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/pages.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__active__event.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__bitmap.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__color.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__comment.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__curve.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__decode__state.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__encode__state.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__event.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__event__timing.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__font__mapping.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__font__range.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__info.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__memory__guard.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__motion.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__pack__buffer.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__packet.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__palette.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__region.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__state.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__style.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__tracker.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/structkate__tracker__internal.html exists in filesystem
    libkate: /usr/share/doc/libkate/html/tab_b.gif exists in filesystem
    libkate: /usr/share/doc/libkate/html/tab_l.gif exists in filesystem
    libkate: /usr/share/doc/libkate/html/tab_r.gif exists in filesystem
    libkate: /usr/share/doc/libkate/html/tabs.css exists in filesystem
    libkate: /usr/share/licenses/libkate/LICENSE exists in filesystem
    libkate: /usr/share/man/man1/KateDJ.1.gz exists in filesystem
    libkate: /usr/share/man/man1/katalyzer.1.gz exists in filesystem
    libkate: /usr/share/man/man1/katedec.1.gz exists in filesystem
    libkate: /usr/share/man/man1/kateenc.1.gz exists in filesystem
    libtiger: /usr/include/tiger/tiger.h exists in filesystem
    libtiger: /usr/include/tiger/tiger_config.h exists in filesystem
    libtiger: /usr/lib/libtiger.so exists in filesystem
    libtiger: /usr/lib/libtiger.so.5 exists in filesystem
    libtiger: /usr/lib/libtiger.so.5.0.2 exists in filesystem
    libtiger: /usr/lib/pkgconfig/tiger.pc exists in filesystem
    vlc: /usr/bin/svlc exists in filesystem
    vlc: /usr/lib/vlc/plugins/access/libaccess_gnomevfs_plugin.so exists in filesystem
    vlc: /usr/lib/vlc/plugins/access/libvcdx_plugin.so exists in filesystem
    vlc: /usr/lib/vlc/plugins/audio_output/libportaudio_plugin.so exists in filesystem
    vlc: /usr/lib/vlc/plugins/codec/libkate_plugin.so exists in filesystem
    vlc: /usr/lib/vlc/plugins/codec/libtwolame_plugin.so exists in filesystem
    vlc: /usr/lib/vlc/plugins/demux/libgme_plugin.so exists in filesystem
    vlc: /usr/lib/vlc/plugins/gui/libskins2_plugin.so exists in filesystem
    vlc: /usr/lib/vlc/plugins/notify/libnotify_plugin.so exists in filesystem
    vlc: /usr/lib/vlc/plugins/notify/libxosd_plugin.so exists in filesystem
    vlc: /usr/lib/vlc/plugins/text_renderer/libsvg_plugin.so exists in filesystem
    vlc: /usr/lib/vlc/plugins/video_output/libaa_plugin.so exists in filesystem
    vlc: /usr/lib/vlc/plugins/visualization/libgoom_plugin.so exists in filesystem
    vlc: /usr/lib/vlc/plugins/visualization/libprojectm_plugin.so exists in filesystem
    vlc: /usr/share/vlc/skins2/default.vlt exists in filesystem
    vlc: /usr/share/vlc/skins2/fonts/FreeSans.ttf exists in filesystem
    vlc: /usr/share/vlc/skins2/fonts/FreeSansBold.ttf exists in filesystem
    vlc: /usr/share/vlc/skins2/skin.catalog exists in filesystem
    vlc: /usr/share/vlc/skins2/skin.dtd exists in filesystem
    vlc: /usr/share/vlc/skins2/winamp2.xml exists in filesystem
    mtdev: /usr/bin/mtdev-test exists in filesystem
    mtdev: /usr/include/mtdev-mapping.h exists in filesystem
    mtdev: /usr/include/mtdev-plumbing.h exists in filesystem
    mtdev: /usr/include/mtdev.h exists in filesystem
    mtdev: /usr/lib/libmtdev.so exists in filesystem
    mtdev: /usr/lib/libmtdev.so.1 exists in filesystem
    mtdev: /usr/lib/libmtdev.so.1.0.0 exists in filesystem
    mtdev: /usr/lib/pkgconfig/mtdev.pc exists in filesystem
    mtdev: /usr/share/licenses/mtdev/LICENSE exists in filesystem
    Errors occurred, no packages were upgraded.
    Here is the 299 pkg updates
    root@clc ~]# pacman -Syu
    :: Synchronizing package databases...
    core 103.4 KiB 131K/s 00:01 [######################] 100%
    extra 1382.7 KiB 334K/s 00:04 [######################] 100%
    community 1639.9 KiB 328K/s 00:05 [######################] 100%
    :: Starting full system upgrade...
    :: Replace gnupg2 with core/gnupg? [Y/n] y
    resolving dependencies...
    warning: dependency cycle detected:
    warning: udev will be installed before its util-linux dependency
    warning: dependency cycle detected:
    warning: rhino will be installed before its jre7-openjdk-headless dependency
    looking for inter-conflicts...
    Targets (299): akonadi-1.7.1-1 avahi-0.6.31-1 bash-4.2.024-2 binutils-2.22-5
    bluez-4.99-1 boost-libs-1.49.0-1.1 busybox-1.19.4-1
    ca-certificates-java-20120225-1 cifs-utils-5.3-2
    colord-0.1.17-1 coreutils-8.16-2 curl-7.25.0-1
    damageproto-1.2.1-2 device-mapper-2.02.95-1 dhcpcd-5.5.6-1
    dmxproto-2.3.1-2 dnsutils-9.9.0-1 docbook-xml-4.5-5
    e2fsprogs-1.42.1-1 ekiga-3.3.2-3 exempi-2.2.0-1 expat-2.1.0-1
    ffmpeg-20120317-1 fftw-3.3.1-1 file-5.11-1 firefox-11.0-2
    fixesproto-5.0-2 flashplugin-11.2.202.228-1 fluidsynth-1.1.5-2
    fontconfig-2.8.0-2 fontsproto-2.1.2-1 freetype2-2.4.9-2
    gcc-4.7.0-3 gcc-libs-4.7.0-3 gconf-editor-3.0.0-2
    giflib-4.1.6-5 git-1.7.9.6-1 glibc-2.15-10 glproto-1.4.15-1
    gmime-2.6.7-1 gnome-desktop-1:3.2.1-1 gnome-mime-data-2.18.0-6
    gnupg-2.0.19-1 gnupg2-2.0.18-1 [removal] gnutls-3.0.17-1
    gpgme-1.3.1-4 grep-2.11-2 gstreamer0.10-0.10.36-1
    gstreamer0.10-bad-0.10.23-1 gstreamer0.10-base-0.10.36-1
    gstreamer0.10-base-plugins-0.10.36-1
    gstreamer0.10-good-0.10.31-1
    gstreamer0.10-good-plugins-0.10.31-1
    gtk-update-icon-cache-2.24.10-3 gtk2-2.24.10-3 gtk3-3.2.3-3
    guile-1.8.8-2 gvfs-1.10.1-3 gvfs-obexftp-1.10.1-3
    gvim-7.3.475-1 hspell-1.1-2 hsqldb-java-1:1.8.0.10-2
    initscripts-2012.03.2-1 inputproto-2.2-1 intel-dri-8.0.2-1
    iproute2-3.2.0-3 jdk7-openjdk-7.b147_2.1-3
    jre7-openjdk-7.b147_2.1-3 jre7-openjdk-headless-7.b147_2.1-3
    kactivities-4.8.2-1 kbproto-1.0.6-1 kde-l10n-en_gb-4.8.2-1
    kde-wallpapers-4.8.2-1 kdebase-dolphin-4.8.2-1
    kdebase-katepart-4.8.2-1 kdebase-kdepasswd-4.8.2-1
    kdebase-kdialog-4.8.2-1 kdebase-keditbookmarks-4.8.2-1
    kdebase-kfind-4.8.2-1 kdebase-konq-plugins-4.8.2-1
    kdebase-konqueror-4.8.2-1 kdebase-konsole-4.8.2-2
    kdebase-kwrite-4.8.2-1 kdebase-lib-4.8.2-1
    kdebase-plasma-4.8.2-1 kdebase-runtime-4.8.2-1
    kdebase-workspace-4.8.2-2 kdelibs-4.8.2-1
    kdepim-runtime-4.8.2-2 kdepimlibs-4.8.2-1
    khrplatform-devel-8.0.2-1 kmod-7-1 krb5-1.10.1-2
    lame-3.99.5-1 libarchive-3.0.4-1 libbonobo-2.32.1-2
    libcdio-0.83-1 libcroco-0.6.4-1 libdmx-1.1.2-1
    libdrm-2.4.33-1 libedit-20120311_3.0-1 libegl-8.0.2-1
    libevent-2.0.17-1 libexif-0.6.20-2 libfontenc-1.1.1-1
    libgl-8.0.2-1 libglade-2.6.4-3 libglapi-8.0.2-1
    libgles-8.0.2-1 libgnome-2.32.1-3 libgnome-data-2.32.1-3
    libgphoto2-2.4.13-1 libice-1.0.8-1 libiodbc-3.52.8-1
    libkate-0.4.1-3 libldap-2.4.30-1 libltdl-2.4.2-5
    libmtp-1.1.2-1 libmusicbrainz3-3.0.3-2 libmysqlclient-5.5.22-1
    libnl-3.2.7-1 libnotify-0.7.5-1 libpcap-1.2.1-2
    libpciaccess-0.13-1 libpng-1.5.10-1 libpst-0.6.54-1
    libreoffice-base-3.5.1-1 libreoffice-calc-3.5.1-1
    libreoffice-common-3.5.1-1 libreoffice-draw-3.5.1-1
    libreoffice-en-US-3.5.1-1 libreoffice-gnome-3.5.1-1
    libreoffice-impress-3.5.1-1 libreoffice-kde4-3.5.1-1
    libreoffice-math-3.5.1-1 libreoffice-sdk-3.5.1-1
    libreoffice-sdk-doc-3.5.1-1 libreoffice-writer-3.5.1-1
    libsigc++-2.2.10-2 libsm-1.2.1-1 libsocialweb-0.25.20-0
    libspectre-0.2.6-3 libtasn1-2.12-1 libtextcat-2.2-9
    libtiff-4.0.1-1 libtiger-0.3.4-3 libtool-2.4.2-5
    libupnp-1.6.16-1 libwbclient-3.6.3-4 libwpd-0.9.2-2
    libwps-0.2.2-2 libx11-1.4.99.901-1 libxau-1.0.7-1
    libxaw-1.0.10-1 libxcb-1.8.1-1 libxcomposite-0.4.3-2
    libxcursor-1.1.13-1 libxdmcp-1.1.1-1 libxext-1.3.1-1
    libxfixes-5.0-2 libxfont-1.4.5-1 libxft-2.3.0-2 libxi-1.6.0-1
    libxinerama-1.1.2-1 libxkbfile-1.0.8-1 libxklavier-5.1-2
    libxmu-1.1.1-1 libxpm-3.5.10-1 libxrender-0.9.7-1
    libxres-1.0.6-1 libxss-1.2.2-1 libxt-1.1.3-1 libxtst-1.2.1-1
    libxv-1.0.7-1 libxvmc-1.0.7-1 libxxf86dga-1.1.3-1
    libxxf86vm-1.1.2-1 libyaml-0.1.4-2 linux-3.2.13-1
    linux-api-headers-3.3-1 linux-docs-3.2.13-1
    linux-firmware-20120227-1 linux-headers-3.2.13-1
    lm_sensors-3.3.2-1 lpsolve-5.5.2.0-2 lua-5.1.5-1
    lvm2-2.02.95-1 man-db-2.6.1-1 man-pages-3.37-1 mesa-8.0.2-1
    mkinitcpio-0.8.5-1 mkinitcpio-busybox-1.19.4-2 mpfr-3.1.0.p7-1
    mtdev-1.1.2-1 mx-1.4.3-1 mysql-5.5.22-1
    mysql-clients-5.5.22-1 neon-0.29.6-4 net-snmp-5.7.1-2
    networkmanager-0.9.2.0-3 nfs-utils-1.2.5-2
    notification-daemon-0.7.4-1 nouveau-dri-8.0.2-1 nspr-4.9-1
    nss-3.13.3-1 opencore-amr-0.1.3-1 openssh-5.9p1-8
    openssl-1.0.1-2 orbit2-2.14.19-2 oxygen-icons-4.8.2-1
    p11-kit-0.12-1 parted-3.1-1 pcmciautils-018-2
    perl-xml-parser-2.41-2 perl-xml-simple-2.18-4 poppler-0.18.4-1
    poppler-glib-0.18.4-1 ppl-0.12-1 psmisc-22.16-1
    ptlib-2.10.2-2 python-pexpect-2.3-6 qrencode-3.3.0-1
    qt-4.8.1-1 randrproto-1.3.2-2 raptor-2.0.7-1 recode-3.6-7
    recordproto-1.14.2-1 renderproto-0.11.1-2 rhino-1.7R3-2
    ruby-1.9.3_p125-3 sane-1.0.22-7 scrnsaverproto-1.2.2-1
    sdl_ttf-2.0.11-2 shadow-4.1.5-4 shared-color-targets-0.1.1-1
    smbclient-3.6.3-4 soprano-2.7.5-1 sound-juicer-2.32.1-2
    sqlite3-3.7.11-1 subversion-1.7.4-1 sudo-1.8.4.p4-1
    syslog-ng-3.3.4-4 taglib-1.7.1-1 thunderbird-11.0.1-1
    ttf-dejavu-2.33-2 tzdata-2012b-3 udev-181-5 udisks-1.0.4-2
    usbutils-005-1 util-linux-2.21-6 videoproto-2.3.1-2
    vim-runtime-7.3.475-1 vlc-2.0.1-1 whois-5.0.15-1
    wpa_actiond-1.2-1 wpa_supplicant-0.7.3-5 xbitmaps-1.1.1-2
    xcb-proto-1.7.1-1 xextproto-7.2.1-1 xf86-input-evdev-2.7.0-2
    xf86-input-synaptics-1.5.99.902-1 xf86-video-intel-2.18.0-1
    xf86-video-nouveau-0.0.16_git20120210-1
    xf86vidmodeproto-2.3.1-2 xineramaproto-1.2.1-2
    xorg-bdftopcf-1.0.3-2 xorg-font-util-1.3.0-1
    xorg-font-utils-7.6-3 xorg-fonts-encodings-1.0.4-3
    xorg-luit-1.1.1-1 xorg-server-1.12.0.901-1
    xorg-server-common-1.12.0.901-1 xorg-server-utils-7.6-3
    xorg-setxkbmap-1.3.0-1 xorg-utils-7.6-8 xorg-xauth-1.0.7-1
    xorg-xbacklight-1.1.2-3 xorg-xcursorgen-1.0.5-1
    xorg-xdriinfo-1.0.4-3 xorg-xev-1.2.0-1 xorg-xgamma-1.0.5-1
    xorg-xhost-1.0.5-1 xorg-xinput-1.5.99.1-1 xorg-xkbcomp-1.2.4-1
    xorg-xkbevd-1.1.3-1 xorg-xkbutils-1.0.3-3 xorg-xkill-1.0.3-3
    xorg-xlsatoms-1.1.1-1 xorg-xlsclients-1.1.2-2
    xorg-xmodmap-1.0.6-1 xorg-xpr-1.0.4-1 xorg-xrdb-1.0.9-2
    xorg-xrefresh-1.0.4-3 xorg-xsetroot-1.1.0-3
    xorg-xvinfo-1.1.1-3 xorg-xwd-1.0.5-2 xorg-xwud-1.0.4-1
    xproto-7.0.23-1 xz-5.0.3-2
    Total Download Size: 160.85 MiB
    Total Installed Size: 2291.87 MiB
    Net Upgrade Size: 101.97 MiB
    Proceed with installation? [Y/n] y
    Last edited by killnine (2012-04-05 14:17:33)

    karol wrote:
    You can check if the 'files' file has the files that are causing errors, e.g.
    [karol@black ~]$ grep "usr/lib/httpd/modules/mod_dontdothat.so" $(find /var/lib/pacman/local -name "subversion-*")/files
    usr/lib/httpd/modules/mod_dontdothat.so
    but I think there's something else going on.
    I've noticed all of the errors concern files from /usr. Do you have some special setup, like a separate /usr partition?
    [root@clc ~]# fdisk -l
    Disk /dev/sda: 750.2 GB, 750156374016 bytes
    255 heads, 63 sectors/track, 91201 cylinders, total 1465149168 sectors
    Units = sectors of 1 * 512 = 512 bytes
    Sector size (logical/physical): 512 bytes / 4096 bytes
    I/O size (minimum/optimal): 4096 bytes / 4096 bytes
    Disk identifier: 0x07f2837e
    Device Boot Start End Blocks Id System
    /dev/sda1 63 208844 104391 de Dell Utility
    Partition 1 does not start on physical sector boundary.
    /dev/sda2 * 212992 41172991 20480000 7 HPFS/NTFS/exFAT
    /dev/sda3 41172992 1255431919 607129464 7 HPFS/NTFS/exFAT
    /dev/sda4 1255431920 1451440984 98004532+ 5 Extended
    /dev/sda5 1255431983 1287433399 16000708+ 83 Linux
    Partition 5 does not start on physical sector boundary.
    /dev/sda6 1287433463 1303434139 8000338+ 83 Linux
    Partition 6 does not start on physical sector boundary.
    /dev/sda7 1303434203 1451440984 74003391 83 Linux
    Partition 7 does not start on physical sector boundary.
    [root@clc ~]# mount
    /dev/sda5 on / type ext4 (rw,relatime,user_xattr,acl,barrier=1,data=ordered)
    proc on /proc type proc (rw,nosuid,nodev,noexec,relatime)
    sys on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)
    run on /run type tmpfs (rw,nosuid,nodev,relatime,mode=755)
    /dev on /dev type devtmpfs (rw,nosuid,relatime,size=4033576k,nr_inodes=1008394,mode=755)
    devpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=000)
    shm on /dev/shm type tmpfs (rw,nosuid,nodev,relatime)
    tmpfs on /tmp type tmpfs (rw,nosuid,nodev,relatime)
    /dev/sda7 on /home type ext4 (rw,relatime,user_xattr,acl,barrier=1,data=ordered)
    /dev/sda6 on /var type ext4 (rw,relatime,user_xattr,acl,barrier=1,data=ordered)
    gvfs-fuse-daemon on /root/.gvfs type fuse.gvfs-fuse-daemon (rw,nosuid,nodev,relatime,user_id=0,group_id=0)
    [root@clc ~]# cat /etc/fstab
    # /etc/fstab: static file system information
    # <file system> <dir> <type> <options> <dump> <pass>
    tmpfs /tmp tmpfs nodev,nosuid 0 0
    LABEL=home /home ext4 defaults 0 1
    LABEL=root / ext4 defaults 0 1
    LABEL=var /var ext4 defaults 0 1

  • [Solved]Can't install Thunar, 'index.theme exists in filesystem' error

    Hi,
    I'm trying to install Thunar via 'pacman -S thunar'.   The packages downloaded fine, but after that, I get this output:
    error: could not prepare transaction
    error: failed to commit transaction (conflicting files)
    hicolor-icon-theme: /usr/share/icons/hicolor/index.theme exists in filesystem
    Errors occured, no packages were upgraded.
    Any idea what's wrong?   I would simply go and remove the conflicting file, but I don't know if anything's using it.   I'm using a almost-fresh install of Arch with Openbox.
    Last edited by vertimyst (2009-02-25 04:44:53)

    Thanks for the advice - I made a backup of the file just in case before deleting it, and Thunar installed fine after that.   Nothing seems broken (yet).
    Thanks again!

  • Conflicting Files Error /foo/bar exists in filesystem

    I tried to do a full update last night and once pacman had acquired all of the files it produced some errors which can be seen below (all of the packages I upgraded can also be seen below):
    Targets (353): libx11-1.1.5-2 expat-2.0.1-2 dbus-core-1.2.3-1 dbus-1.2.3-3 bluez-4.1-1 a52dec-0.7.4-4 gpm-1.20.5-2 aalib-1.4rc5-6 libpng-1.2.33-1 libjpeg-6b-5
    libtiff-3.8.2-4 hal-info-0.20081022-1 pciutils-3.0.2-1 procps-3.2.7-5 pm-utils-1.2.2.1-1 bash-3.2.039-3 e2fsprogs-1.41.3-2 util-linux-ng-2.14-1
    udev-130-1 hal-0.5.11-4 libdrm-2.4.1-1 openssl-0.9.8i-2 xkeyboard-config-1.3-1 libpciaccess-0.10.4-1 xorg-server-1.5.2-3 nvidia-utils-177.80-1
    mesa-7.2-1 sqlite3-3.6.4-1 qt-4.4.3-1 shared-mime-info-0.51-1 akonadi-1.0.0-2 gettext-0.17-2 heimdal-1.2-2 alpine-2.00-1 alsa-lib-1.0.17a-2
    dialog-1.1_20080819-1 alsa-utils-1.0.17-1 amarok-engine-xine-1.4.10-1 postgresql-libs-8.3.5-1 qt3-3.3.8-9 ruby-1.8.7_p72-2 amarok-base-1.4.10-1
    apr-1.3.3-1 unixodbc-2.2.12-2 apr-util-1.3.4-1 apache-2.2.10-1 archlinux-menus-2.1-2 aspell-0.60.6-2 libbonobo-2.24.0-1 at-spi-1.24.0-2 texinfo-4.13a-1
    m4-1.4.12-1 autoconf-2.63-1 avahi-0.6.23-1 binutils-2.18-9 bzip2-1.0.5-3 python-2.6-2 boost-1.36.0-2 gnome-keyring-2.24.1-1 fam-2.7.0-11 popt-1.14-1
    tdb-3.2.4-1 smbclient-3.2.4-3 gnome-vfs-2.24.0-1 libgnome-2.24.1-1 libbonoboui-2.24.0-1 libgnomeui-2.24.0-1 libglade-2.6.3-1
    evolution-data-server-2.24.1-1 totem-plparser-2.24.2-1 brasero-0.8.2-2 pycairo-1.6.4-2 pygobject-2.15.4-2 python-numeric-24.2-3 pygtk-2.13.0-2
    gnome-menus-2.24.1-3 libxau-1.0.4-1 libgtop-2.24.0-1 bug-buddy-2.24.1-1 run-parts-2.30-1 ca-certificates-20080809-5 cairomm-1.6.4-1 cdparanoia-10.2-2
    gstreamer0.10-base-plugins-0.10.21-1 librsvg-2.22.3-1 cheese-2.24.1-1 curl-7.19.0-1 conky-1.6.1-2 cpufrequtils-005-2 cracklib-2.8.13-1 libgcrypt-1.4.3-2
    cryptsetup-1.0.6-2 gnome-speech-0.4.21-1 dasher-4.9.0-1 dbus-python-0.83.0-2 desktop-file-utils-0.15-1 dhcpcd-4.0.3-1 libassuan-1.0.5-1 libksba-1.0.3-1
    dirmngr-1.0.2-1 jre-6u10-1 jdk-6u10-1 hunspell-1.2.6-1 xulrunner-1.9.0.3-1 eclipse-3.4.1-1 eclipse-cdt-5.0.1-1 ed-1.1-2 gnome-desktop-2.24.1-1
    eel-2.24.1-1 emacs-nox-22.3-2 gnome-icon-theme-2.24.0-1 eog-2.24.1-1 libtool-2.2.6a-1 libcanberra-0.10-1 epiphany-2.24.1-2 poppler-glib-0.8.6-1
    evince-2.24.1-1 evolution-webcal-2.24.0-1 libxfce4util-4.4.3-1 exo-0.3.4-3 fakeroot-1.10.1-1 file-4.26-1 file-roller-2.24.1-1 wxgtk-2.8.9-1
    filezilla-3.1.2-1 firefox-3.0.3-1 flashplugin-10.0.12.36-2 fluxbox-1.1.1-1 frostwire-4.17.0-1 fuse-2.7.4-1 gcalctool-5.24.1-1 gmp-4.2.4-1.1 mpfr-2.3.2-2
    gcc-4.3.2-1 gconf-editor-2.24.1-1 gksu-2.0.0-4 pam-1.0.2-2 zenity-2.24.0-1 consolekit-0.3.0-2 gdm-2.20.8-1 gtksourceview2-2.4.0-1
    pygtksourceview2-2.4.0-1 gedit-2.24.0-2 ghostscript-8.63-3 babl-0.0.22-1 gegl-0.0.20-1 gimp-2.6.2-1 libsigc++2.0-2.2.3-1 glibmm-2.18.1-1 libical-0.41-1
    gnokii-0.6.26-2 libgweather-2.24.1-1 libwnck-2.24.1-1 policykit-gnome-0.9.2-2 gnome-panel-2.24.1-1 gucharmap-2.24.1.1-1 libxklavier-3.7-1
    libgnomekbd-2.24.0-1 gnome-applets-2.24.1-2 gnome-backgrounds-2.24.0-1 gnome-settings-daemon-2.24.0-1 metacity-2.24.0-1 sound-theme-freedesktop-0.1-1
    gnome-control-center-2.24.0.1-3 rarian-0.8.1-1 gnome-doc-utils-0.14.0-1 pyorbit-2.24.0-2 gnome-python-2.22.3-3 gnome-python-desktop-2.24.0-2 guile-1.8.4-3
    gnome-games-2.24.1-1 gnome-games-extra-data-2.24.0-1 gnome-mag-0.15.4-1 gnome-media-2.24.0.1-1 gnome-netstatus-2.12.2-1 dnsutils-9.5.0.P2-1
    xinetd-2.3.14-3 netkit-bsd-finger-0.17-3 whois-4.7.28-2 gnome-nettool-2.22.1-1 gnome-power-manager-2.24.1-1 gnome-screensaver-2.24.0-1
    gnome-session-2.24.1-1 libgdiplus-2.0-1 mono-2.0-1 gtk-sharp-2-2.12.5-1 gnome-sharp-2.24.0-1 pango-1.22.2-1 pangomm-2.14.0-1 gtkmm-2.14.1-1
    gnome-system-monitor-2.24.1-1 vte-0.17.4-2 gnome-terminal-2.24.1.1-1 gtk-engines-2.16.0-1 gnome-themes-2.24.1-1 gnome-utils-2.24.1-1
    gnome-volume-manager-2.24.0-1 lzma-utils-4.32.7-1 yelp-2.24.0-2 gnome2-user-docs-2.24.0-1 pinentry-0.7.5-3 gnupg2-2.0.9-1 gok-2.24.0-1 grub-0.97-13
    gstreamer0.10-python-0.10.13-2 gtk-xfce-engine-2.4.3-1 libcdio-0.80-3 libgphoto2-2.4.3-1 gvfs-1.0.2-1 hdparm-8.9-1 hwdetect-0.9.1-2 ilmbase-1.0.1-1
    openexr-1.6.1-1 imagemagick-6.4.5.1-1 initscripts-2008.09-2 inputproto-1.4.4-1 linux-atm-2.5.0-1 iproute-2.6.26-1 iputils-20071127-2 irssi-0.8.12-4
    jack-audio-connection-kit-0.109.2-2 jfsutils-1.1.13-1 k3b-1.0.5-2 module-init-tools-3.4-1 kernel26-2.6.27.4-1 klibc-1.5.14-1 klibc-extras-2.5-1
    klibc-kbd-1.15.20080312-7 klibc-module-init-tools-3.4-2 klibc-udev-130-1 libburn-0.5.2-1 libdvdcss-1.2.10-1 libepc-0.3.8-1 libgnomecups-0.2.3-3
    libgnomeprint-2.18.3-3 mutagen-1.14-2 libgpod-0.6.0-3 libieee1284-0.2.11-2 libisofs-0.6.10-1 libnjb-2.2.5-4 libnova-0.12.2-1 libraw1394-1.3.0-2
    libtasn1-1.5-2 libtorrent-0.11.9-2 libxfce4mcs-4.4.3-1 libxfcegui4-4.4.3-1 libzip-0.9-1 physfs-1.1.1-1 sdl-1.2.13-3 sdl_mixer-1.2.8-3 lincity-ng-1.1.2-3
    links-2.2-2 lirc-utils-0.8.3-1 logrotate-3.7.7-3 madwifi-utils-0.9.4.3844-1 madwifi-0.9.4.3844-2 man-pages-3.11-1 mdadm-2.6.7-1 mlocate-0.21-1
    moc-2.4.3-4 mono-addins-0.3.1-4 mousepad-0.2.14-1 mpg123-1.6.0-1 nano-2.0.9-1 nautilus-2.24.1-1 nautilus-cd-burner-2.24.0-1 neon-0.28.3-1 netcfg-2.1.2-1
    netkit-ftp-0.17-6 nitrogen-1.4-1 ntfs-3g-1.5012-1 rrdtool-1.2.27-2 ntop-3.3.8-1 nvidia-177.80-2 icu-4.0-2 hsqldb-java-1.8.0.10-1 openoffice-base-3.0.0-3
    openssh-5.1p1-1 opera-9.62-1 orca-2.24.1-2 pacman-3.2.1-1 pcmciautils-015-2 postgresql-8.3.5-1 procinfo-19-3 psmisc-22.6-2 python-gdata-1.2.2-2
    pyxml-0.8.4-5 qimageblitz-0.0.5-1 quodlibet-2.0-3 rhythmbox-0.11.6-3 rp-pppoe-3.10-1 rtorrent-0.7.9-3 shadow-4.1.2.1-2 screen-4.0.3-6
    scrnsaverproto-1.1.0-2 sdparm-1.03-1 zip-3.0-1 seahorse-2.24.1-1 sound-juicer-2.24.0-1 speex-1.2rc1-1 thunar-0.9.3-1 squeeze-0.2.3-2 strace-4.5.18-1
    strigi-0.5.11.1-1 subversion-1.5.4-1 synergy-1.3.1-2 tcl-8.5.5-1 terminal-0.2.8.3-1 terminus-font-4.28-1 texlive-core-2008.11171-1
    texlive-latexextra-2008.11143-1 tk-8.5.5-1 gtkhtml-3.24.1-1 gnome-desktop-sharp-2.24.0-1 tomboy-0.12.1-2 totem-2.24.3-1 tree-1.5.2.1-2 ttf-dejavu-2.26-1
    tzdata-2008h-1 v86d-0.1.9-1 vi-7.2.25-1 vino-2.24.1-1 libv4l-0.5.3-1 vlc-0.9.5-3 which-2.20-1 wine-1.1.7-1 wireshark-1.0.4-1 xcb-proto-1.2-2
    xdm-archlinux-0.3-2 xextproto-7.0.3-2 xf86-video-nv-2.1.12-1 xf86-video-vesa-2.0.0-2 xfce-mcs-manager-4.4.3-1 xfce-mcs-plugins-4.4.3-1 xfce-utils-4.4.3-1
    xfce4-appfinder-4.4.3-1 xfce4-icon-theme-4.4.3-1 xfce4-panel-4.4.3-1 xfce4-mixer-4.4.3-2 xfce4-session-4.4.3-1 xfdesktop-4.4.3-1 xfprint-4.4.3-1
    xfsprogs-2.10.1-1 xfwm4-4.4.3-1 xfwm4-themes-4.4.3-1 xine-ui-0.99.5-4 xorg-twm-1.0.4-2 xpdf-3.02_pl2-2 xscreensaver-5.07-1 xterm-235-2 xtrans-1.2.2-1
    xvidcore-1.1.3-2 yakuake-2.9.4-1
    An example of the messages I get is below, they are all the same and just for klibc and xulrunner. What do you recommend?
    checking package integrity...
    (353/353) checking for file conflicts [##########################################################################################################################################] 100%
    error: could not prepare transaction
    error: failed to commit transaction (conflicting files)
    xulrunner: /usr/include/xulrunner-1.9 exists in filesystem
    klibc: /usr/lib/klibc/include/asm/xor_64.h exists in filesystem
    Errors occurred, no packages were upgraded.
    Thanks in advance,
    Tom

    The fix for klibc is to run
    rm /usr/lib/klibc/include/asm
    then upgrade.
    I uninstalled xulrunner with
    pacman -Rc xulrunner
    and reinstalled firefox. It worked but I don't know if that's the best way.

  • Upgrade issue: /bin/csh exists in filesystem

    So I haven't upgraded in a while since I've been too lazy to fix this.  How do I fix this?  I'm afraid I'll mess something up if i delete /bin/csh...or is that the fix lol.
    (65/65) checking for file conflicts [##########################] 100%
    error: could not prepare transaction
    error: failed to commit transaction (conflicting files)
    tcsh: /bin/csh exists in filesystem
    Errors occurred, no packages were upgraded.

    If its something you need, back it up then delete it.  If you've never edited it, then I'd just delete it.  So basically, yes, deleting it is the fix.  I believe you can run the install with -f flag to force it as an alternative.  I usually just delete the file.

  • [SOLVED] Error "libpng12: /usr/lib/libpng.so.3 exists in filesystem".

    I've just tried to install the stable "google-chrome" package from AUR with the command.  I have all of the dependencies already installed except for these two:
    - libjpeg6 (building from AUR)
    - libpng12 (package found)
    When the package manage tries to install "libpng12-1.2.43-1", I get the following error:
    error: failed to commit transaction (conflicting files)
    libpng12: /usr/lib/libpng.so.3 exists in filesystem
    Errors occurred, no packages were upgraded.
    According to the file manager (Thunar), the file /usr/lib/libpng.so.3 is a link to /usr/lib/libpng.so.
    This is probably a silly question (as I'm a clueless newbie!) but... can I just delete this link and expect the installation of libpng12 to replace it so that everything will still work...?
    Thanks in advance :-)
    Last edited by esuhl (2011-01-21 02:46:19)

    $ pacman -Ql libpng|grep /lib/
    libpng /usr/lib/
    libpng /usr/lib/libpng.a
    libpng /usr/lib/libpng.so
    libpng /usr/lib/libpng14.a
    libpng /usr/lib/libpng14.so
    libpng /usr/lib/libpng14.so.14
    libpng /usr/lib/libpng14.so.14.5.0
    libpng /usr/lib/pkgconfig/
    libpng /usr/lib/pkgconfig/libpng.pc
    libpng /usr/lib/pkgconfig/libpng14.pc
    A tip: run pacman -Qo on the file in question, either you put that symlink there yourself or strange things are happening on your system.

  • Problem Upgrading Udev: /lib/udev/root-link.sh: exists in filesystem

    Targets: amarok-base-1.4.5-2 amarok-engine-xine-1.4.5-2 aquamarine-svn-3810-1
    beryl-core-svn-3871-1 beryl-manager-svn-3810-1 beryl-plugins-svn-3883-1
    beryl-settings-bindings-svn-3550-2 beryl-settings-svn-3885-1
    bison-2.3-2 dbus-1.0.2-4 dbus-glib-0.73-1 e2fsprogs-1.39-2
    emerald-svn-3810-1 freetype2-2.3.1-1 gcc-4.1.2-3 glibc-2.5-4
    gnupg2-2.0.2-1 vim-7.0.191-1 gvim-7.0.191-1 hal-0.5.8.1-6 kbd-1.12-6
    kdelibs-3.5.6-4 kdepim-3.5.6-3 kernel-headers-2.6.20-1
    kernel26-2.6.20-3 klibc-udev-105-1 ktorrent-2.1-1 libgphoto2-2.3.1-1
    libpng-1.2.16-1 libx11-1.1.1-2 lshwd-1.1.3-5 nvidia-1.0.9746-1
    nvidia-suspend2-1.0.9746-1 nvidia-utils-1.0.9746-1 orbit2-2.14.6-1
    pmount-0.9.13-4 postgresql-libs-8.1.8-1 pygtk-2.10.4-1 samba-3.0.24-3
    seom-svn-161-1 smbclient-3.0.24-1 udev-105-4 unrar-3.7.3-1
    xchat-2.8.0-1
    Total Package Size: 168.8 MB
    Proceed with upgrade? [Y/n] Y
    checking package integrity... done.
    loading package data... done.
    checking for file conflicts...
    error: the following file conflicts were found:
    udev: /lib/udev/root-link.sh: exists in filesystem
    errors occurred, no packages were upgraded.
    I got the above after doing pacman -Syu... Any ideas?

    Yes, you put that file over there as workaround for the hal rootfs-shows-twice bug, and now it got included into udev

  • Error installing package from AUR. /usr/lib64 exists in filesystem

    I installed the package zoneminder-xinetd 1.27.0-1 using the instruction on the wiki, the installation finished successfully. then I realized that the package was outdated, so I uninstalled it using "sudo pacman -R zoneminder-xinetd", manually edit the files .AURINFO and PKGBUILD to get the new version, compiled successfully using 'makepkg -s' but when I'm try to install it(sudo pacman -U zoneminder-xinetd-1.28.0-1-x86_64.pkg.tar.xz) I got this error:
    error: failed to commit transaction (conflicting files)
    zoneminder-xinetd: /usr/lib64 exists in filesystem
    Errors occurred, no packages were upgraded.
    I also tried to install this other package https://aur.archlinux.org/packages/zoneminder after removing some unwanted dependencies but i get the same error.

    fsckd wrote:Pacman 4.2 handles symlinks differently than past versions of pacman. Allan's blog has a good description (see the section "Directory Symlink Handling") http://allanmcrae.com/2014/12/pacman-4-2-released/. I suggest you inform the maintainers of those packages so that they may update the PKGBUILDs.
    Thanks for the quick answer.
    I solved this issue by adding "-DCMAKE_INSTALL_LIBDIR=/lib" to the cmake in the PKGBUILD. The mantainer of the zoneminder package solved this already by adding "-DZM_PERL_SUBPREFIX=/lib/perl5 \".
    Also, I adopted the zoneminder-xinetd package .

  • [SOLVED] Error: boo.lang exists in filesystem

    I tried running a system update with pacman -Syu.
    Grabs all the packages successfully, then shows this at the end:
    error: could not prepare transaction
    error: failed to commit transaction (conflicting files)
    boo: /usr/share/gtksourceview-1.0/language-specs/boo.lang exists in filesystem
    Errors occurred, no packages were upgraded.
    If anyone could give me advice as to what to do, I'd be grateful.
    The only forum thread I can find similar to this issues is this one, but isn't quite my issue (I don't think).
    Thanks.
    Last edited by chrispoole (2009-02-21 15:55:40)

    tdy wrote:Sticky: pacman error: FILENAME exists in filesystem
    Thanks for this.
    I had searched around, but found nothing (perhaps searching for the wrong line).
    However, I'm surprised that this issue with pacman is in a sticky thread in the newbie forum, not the pacman forum.
    Anyway, I checked the ownership, removed the file, ran the upgrade, and all is ok. Thanks.

  • Pacman error: FILENAME exists in filesystem

    This comes up quite often, and since users are not using the excellent forum search function, it will be stickied.
    error: could not prepare transaction
    error: failed to commit transaction (conflicting files)
    libname: /insert/file/name/here exists in filesystem
    Errors occurred, no packages were upgraded.
    Why this is happening: pacman has detected a file conflict, and by design, will not overwrite files for you. This is a design feature, not a flaw.
    It is the user's responsibility to maintain their system, not the package manager's. (pacman -Qo may be invoked to query which package owns the file, if any.)
    What can be done to solve this: The issue is usually trivial to solve. A safe way is to firstly check if another package owns the file (pacman -Qo <full file path>).  If the file is owned by another package file a bug report If the file is not owned by another package rename (or remove) the the file which 'exists in filesystem', and reissue the pacman -Syu command. If all goes well, the file may then be removed.
    As always, there may be exceptions, so check the front page Arch news, Announcement lists, and optionally the forum and Mailing Lists for possible known issues.
    pacman can also be forced to overwrite the files, if you know what you are doing. Please read this post for more information.

    If that's what happens, then there's something wrong. Let's call it common sense . 200 files is quite a lot. I've never had a 'massive' update myself that gave that many duplicate files - I hope you took the time to read Misfit138's recommendations and acted upon them - and I hope you update regularly, but your wording suggests you don't. That in itself can cause things to break more easily.
    Also - I recommend you open your own topic instead of hijacking a sticky for this. This isn't supposed to turn into a help topic.

  • [SOLVED] error pacman: /var/cache/pacman/pkg exists in filesystem

    Hi guys, yesterday night I tried to update my system and I got the following error which seems weird:
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    looking for conflicting packages...
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    Total Installed Size: 4.22 MiB
    Net Upgrade Size: 0.00 MiB
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    (1/1) checking keys in keyring [##########################################################] 100%
    (1/1) checking package integrity [##########################################################] 100%
    (1/1) loading package files [##########################################################] 100%
    (1/1) checking for file conflicts [##########################################################] 100%
    error: failed to commit transaction (conflicting files)
    pacman: /var/cache/pacman/pkg exists in filesystem
    Errors occurred, no packages were upgraded.
    It seems weird to me because it conflicts to the whole folder and not to any specific package. Any clue, what is going on and how to solve it?
    Last edited by theodore (2015-01-26 19:51:37)

    clfarron4 wrote:
    theodore wrote:
    Allan wrote:Is your /var/cache/pacman/pkg a directory or a symlink?
    yes I have it in a different partition and then I have symilinked it
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    If you don't want to do that, then I'll leave someone else to put up a solution (my brain's screaming bind mounts for some unknown reason).
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  • [Solved]Error with installing package: /usr/lib64 exists in filesystem

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    the error i get when trying to install a package from the AUR
    error: failed to commit transaction (conflicting files)
    hp-health: /usr/lib64 exists in filesystem
    Errors occurred, no packages were upgraded.
    I tried to find who owned the files/package in the /lib by the following commands
    $ grep '^lib/' /var/lib/pacman/local/*/files
    $ find /lib -exec pacman -Qo -- {} +
    the output was
    /lib is owned by filesystem 2015.02-1
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    If any package apart from glibc is listed as owning a file, that package needs to be updated to install its files in /usr/lib
    Last edited by PigsInSpace (2015-03-01 02:25:24)

    You are following directions for a file conflict with /lib for a very specific one-time manual intervention, but you don't have that file conflict according to the error message you posted and it is not for that intervention.  See this instead: https://wiki.archlinux.org/index.php/Pa … 9.22_error then report the error on the aur page for that package.
    This fixes it:
    package() {
    cd "$srcdir"
    + mv usr/lib64 usr/lib
    cp -a opt usr var "$pkgdir"

  • Cannot upgrade PCManFM: libfm: /usr/include/libfm exists in filesystem

    Hey,
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    Maybe it's related to this news: "ConsoleKit replaced by logind" by if that's the case I don't know how to deal with it.
    Anyway, I thought that a pacman -Syu could be a good start, I happily saw a upgrade of libfm & pcmanfm was available, but I can't get the upgrade done:
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    [sudo] password for david:
    :: Synchronizing package databases...
    core is up to date
    extra                   1424.5 KiB   510K/s 00:03 [######################] 100%
    community               1775.9 KiB   572K/s 00:03 [######################] 100%
    multilib is up to date
    :: Starting full system upgrade...
    resolving dependencies...
    looking for inter-conflicts...
    Targets (2): libfm-1.1.0-1  pcmanfm-1.1.0-1
    Total Download Size:    0.60 MiB
    Total Installed Size:   4.86 MiB
    Net Upgrade Size:       -1.16 MiB
    Proceed with installation? [Y/n] y
    :: Retrieving packages from community...
    libfm-1.1.0-1-x86_64     455.3 KiB   304K/s 00:01 [######################] 100%
    pcmanfm-1.1.0-1-x86_64   160.5 KiB   502K/s 00:00 [######################] 100%
    (2/2) checking package integrity                   [######################] 100%
    (2/2) loading package files                        [######################] 100%
    (2/2) checking for file conflicts                  [######################] 100%
    error: failed to commit transaction (conflicting files)
    libfm: /usr/include/libfm exists in filesystem
    Errors occurred, no packages were upgraded.
    If it can be of anyhelp:
    My .xinitrc:
    #!/bin/sh
    # ~/.xinitrc
    # Executed by startx (run your window manager from here)
    if [ -d /etc/X11/xinit/xinitrc.d ]; then
      for f in /etc/X11/xinit/xinitrc.d/*; do
        [ -x "$f" ] && . "$f"
      done
      unset f
    fi
    exec openbox-session
    # exec gnome-session
    # exec startkde
    # exec startxfce4
    # ...or the Window Manager of your choice
    Thank you !

    Every installed package provides /var/lib/pacman/local/$package-$version/files file that contains metadata about this package. If this file gets corrupted - is empty or missing - it results in "file exists in filesystem" errors when trying to update the package. Such an error usually concerns only one package and instead of manually renaming and later removing all the files that belong to the package in question, you can run pacman -S --force $package to force pacman to overwrite these files.
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    https://wiki.archlinux.org/index.php/Pa … stem.22.21

  • Pacman error with "/usr/share/man exists in filesystem"

    I'm installing archlinux.
    Follwing beginners guide, I'm now installing some booting packages, dosfools,efibootmgr, grub. Install Boot loader
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    error: failed to commit transaction (conflicting files)
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    Errors occurred, no packages were upgraded.
    Same error occurs for other packages wich same error messages.
    I formatted all disk using mkfs.ext4 command.. Why this error occur?

    Trilby wrote:What is the output of `pacman -Qo /usr/share/man` as suggested here?
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  • [Solved] KDEMod Install Errors -- "Exists in Filesystem"

    I just put a fresh Arch install on my box. I've been using VectorLinux 5.x SOHO since, well, for years, and have been meaning to try Arch beyond just exploratory use. My Vector 5.1.1 SOHO install is just simply showing it's age now and after 5.9 SOHO was released as a pay-for-only release, I'm finally getting around to give Arch a serious go.
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    checking package integrity...
    checking for file conflicts...
    error: could not prepare transaction
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    libgl: /usr/lib/libGL.so.1 exists in filesystem
    libgl: /usr/lib/xorg/modules/extensions/libglx.so exists in filesystem
    mesa: /usr/include/GL/gl.h exists in filesystem
    mesa: /usr/include/GL/glext.h exists in filesystem
    mesa: /usr/include/GL/glx.h exists in filesystem
    mesa: /usr/include/GL/glxext.h exists in filesystem
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    DrCR
    Last edited by DrCR (2008-07-29 22:17:05)

    Solution:
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    DrCR

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