No Changes to Check in

Hello!
One of our users checked out a file out of TFS. She replaced the file in that workspace with a modified version by copying it from a different location on her computer. She then tried to check it back in TFS. It comes up with a message saying "No Changes to check in. All of the changes were either unmodified files or locks. The changes have been undone by the server." She says OK to it.
Problem: TFS has the latest file checked in with the new changes but the history doesn't reflect that the newer version was added.
This doesn't happen all the time; just sporadically.
Please assist!
Thank you!

Hi,
Two of my team mates get the same error only for couple of files in the solution. Those files are C# forms.
First one has a perticular form which dont even automatically checked out when he edits the code. When manually checked-out, edit and tries to check-in he gets the error. Here the "Compare" option is disabled in the solution explorer and when try to do the comparison using the source control explorer it says that the perticular file has no local mapping (but the solution bindings are there and even he can do get latest for that perticular file.
My other mate has the problem that when he check-out ( here auto check-out works) and edits the form and when do a comparison IDE says that the files are identical (but he has changed it so it differs from the server version). And again when try to check-in the form it pops the same error.
We are using the TFS trial dual server topology with all the SPs (TFS/SQL/Win2003). Also we are using the TFS Power Tools.
Regards,
-Vipul.

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