Oracle Apps RDF Report generates file with ^M (Carriage return) characters

We are upgrading from 11i to r12 (also moving from HP unix to AIX on hardware side) and this rdf report generates a text file which is then eventually sent to a third party system for printing. Report works just fine in 11i as it generates a file without any ^M chars but in R12 environment, the same report generates file with ^M chars.
Also want to understand how the Oracle Apps system hands over the output files to O/S which is saved.
Pls advice
Thanks
Ram M.

What type of concurrent program are we talk about here?
This is a Report type of Concurrent program
How does the text file get generated?
Report is generating a Text file on :desname, a custom folder. 
Was the binary mode used to copy the files from the old server to the new one?
I believe RDF Reports were copied over in Binary format but none of the text files generated from old server are copied over.

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