Performance hit using "where" clause in the query

Hi All,
I am facing a huge performance hit in the java code when using "where" clause in queries. Following are the details:
1. SELECT * FROM Employee
2. SELECT * FROM Employee where employeeid in (26,200,330,571,618,945)
There is no difference in Query Execution Time for both queries.
Business Logic Time is huge in second case as compared to first one (ratio - 1:20).
Rows returned are more in first case as compared to second case.(ratio - 1:4)
Business Logic is same for both the cases where I iterate through the ResultSet, get the objects and set them in a data structure.
Does anybody know the reason of unexpected time difference for the business logic in the second case?

Since you're mentioning clustering your index, I'll assume you are using Oracle. Knowing what database you are using makes it a lot easier to suggest things.
Since you are using Oracle, you can get the database to tell you what execution plan it is using for each of the 2 SQL statements, and figure out why they have similar times (if they do).
First, you need to be able to run SQL*Plus; that comes as part of a standard database installation and as part of the Oracle client installation - getting it set up and running is outside the scope of this forum.
Second, you may need your DBA to enable autotracing, if it's not already:
http://asktom.oracle.com/~tkyte/article1/autotrace.html
http://www.samoratech.com/tips/swenableautotrace.htm
Once it's all set up, you can log in to your database using sql*plus, issue "SET AUTOTRACE ON", issue queries and get execution plan information back.
For example:
SQL> set autotrace on
SQL> select count(*) from it.ticket where ticket_number between 10 and 20;
  COUNT(*)
        11
Execution Plan
Plan hash value: 2983758974
| Id  | Operation         | Name       | Rows  | Bytes | Cost (%CPU)| Time     |
|   0 | SELECT STATEMENT  |            |     1 |     4 |     1   (0)| 00:00:01 |
|   1 |  SORT AGGREGATE   |            |     1 |     4 |            |          |
|*  2 |   INDEX RANGE SCAN| TICKET_N10 |    12 |    48 |     1   (0)| 00:00:01 |
Predicate Information (identified by operation id):
   2 - access("TICKET_NUMBER">=10 AND "TICKET_NUMBER"<=20)
Statistics
          0  recursive calls
          0  db block gets
          1  consistent gets
          0  physical reads
          0  redo size
        515  bytes sent via SQL*Net to client
        469  bytes received via SQL*Net from client
          2  SQL*Net roundtrips to/from client
          0  sorts (memory)
          0  sorts (disk)
          1  rows processed
SQL> This tells me that this query used an INDEX RANGE SCAN on index TICKET_N1; the query can't do much better than that logically... In fact, the statistic "1 consistent gets" tells me that Oracle had to examine only one data block to get the answer, also can't do better than that. the statistic, "0 physical reads" tells me that the 1 data block used was already cached in Oracle's memory.
the above is from Oracle 10g; autotrace is available back to at least 8i, but they've been adding information to the output with each release.
If you have questions about sql_plus, check the forums at asktom.oracle.com or http://forums.oracle.com/forums/category.jspa?categoryID=18
since sql*plus is not a JDBC thing...
Oh, and sql*plus can also give you easier access to timing information, with "set timing on".

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