Problems Getting to Sites After Installing SP2 and Dec CU

Our setup was running great for the last year and a half.  We decided to install SP2 and the CU’s that had been released since. The updates and CU installs went fine. However, after the install we are having problems with users being prompted
with credentials.   When going to any of the sites (not AAM) our users can get in fine. However, if we browse to one of the other sites we are continually prompted for credentials and can’t get in. For example, if I go to
App1 I get in fine but, when I go from App1  to App2 , I continually get prompted for credentials. If I start by going to App2 I get in fine but continually get prompted for credentials when going from App2 to App1. In addition, if I go to
any of the AAM’s I get in just fine. However, if I try to go to any other site after this, I get the credential prompts. It seems like an issue with the session.
 I have looked through the event logs, used the trace utility, fiddler and tried changing the auth setting s with no luck, no apparent problems in the logs or detail.
 Any advice or help would be appreciated. Again everything worked until we installed the updates
We are using claims authentication with windows NTLM. Our SharePoint server’s host name is SP01.company.com. We have three SharePoint 2010 applications. The SharePoint Install is on Windows 2008R2, Is a virtual machine, running in a Windows 2012 Hyper-V
cluster with 2012 Nic Teaming
App1 – using standard port 80 –site with simple content - No AAM
Default: Sp01.company.com
App2 – site configured with simple content
Default: Sp01.company.com:9701
Intranet: docs.company.com  – AAM for Sp01.company.com:9701
App3 – team sites and simple content.
Default: Sp01.company.com:9882
Intranet: teamsites.company.com –AAM for
 Sp01.company.com:9882

Hi Cybersoul1
have you run the PSConfid Wizard after SP2 and the CU’s?
psconfig.exe -cmd upgrade -inplace b2b -wait
please make sure that this has to be run on call the server.
reference : http://blogs.technet.com/b/sbs/archive/2011/05/24/you-must-manually-run-psconfig-after-installing-sharepoint-2010-patches.aspx
Thanks, ShankarSingh

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