PSE not saving edited files to the organiser

For no apparent reason my PSE 11 application seems to have developed an annoying glitch whereby part way through an editing process it stops doing as requested in the "Save" options, by not saving edited files as version sets of the original file in the Organiser. The files are saved OK to My Pictures and I then get advised that a file is available to import and I have to import each one, stack it with the original, and put the edited file on top. This is driving me nuts as I have about 1000 photos to edit. What is causing this problem? My only thoughts are that I have c.30000 picture files in the Organiser (but this hasn't caused any problems in adding new files) and that the problem seems to have arisen since I started editing files directly from within an Album.
Help

It's the first time I see that bug mentionned in PSE11, but it's an acknowledged bug in PSE12.
See that post with links for the workarounds:
http://forums.adobe.com/thread/1328850

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