Register system to SLD with fully qualified name

Anybody know how to register the host name for an abap system to the SLD so it uses the fully qualified DNS name?   According to the help files in the SLD, it say's:   "By default, host names in SLD are written lower case without any network domain"
Our SAP servers are in:
ex.) abc.domain.com
Our desktops are in:
ex.) def.domain.com
So, when developers try to register their local NWDS to the SLD,  they cannot reach it.  The only solution is for them to add the SAP Server domain (dx.domain.com) into their local tcp/ip settings on their desktop.
Does anybody else have this same issue?  Any suggestions on how we can use a FQ DNS name for SLD registration?
-Dave

Sorry for the confusion.  I think I may have mis-worded my own question.  It was a Friday!
Want I meant to say was, our developers' local JCo connections fail when they try to make a connection to an SAP system listed in the SLD.   This is because the two machines (pc and SAP server) reside in different domains. 
SAP Servers are in abc.domain.com
Desktop computers are in def.domain.com
The only way for the JCo connection to work from their desktop, is if the developer adds "abc.domain.com" into the tcp/ip settings on their desktop.
If we could register the SAP system in the SLD as a Fully Qualified Name, I think the problem would disappear.

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