Run after effects script without opening after effects?

I have a project as a template. I want to run a script that injects itself with the project and replaces videos and text depending on the contents of my script file. So far so good, but can I run the script without opening after effects GUI? I use this now: afterfx -r c:\script_path\example_script.jsx. Is it considered best practice to have after effects GUI up and running if going to do many script changes on the template? Basically I am looking for the same functionality as aerender with no GUI.

To my knowledge scripts cannot change projects without the program actually running. Scripts merely call reflections of the internal commands which only are available when the program runs in full. Perhaps some of that has changed in AE CC, but I'm not aware of it.
Mylenium

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    ## Detail 0 ##
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    ## Detail 0 ##
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    oracle.jbo.JboException: JBO-29000: Unexpected exception caught: oracle.jbo.JboException, msg=JBO-29000: Unexpected exception caught: oracle.jbo.NoDefException, msg=JBO-25002: Definition flsm.oracle.apps.po.per.server.FlsmrootAM of type ApplicationModule not found
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    ## Detail 0 ##
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