Runtime.exec p.waitFor hangs in background mode

Hello,
I have problem while running on Solaris using java 1.4.1:
Part of the program executes shell commands like chmod +x, ... when the program is run in the foreground mode, everything works Ok, but when it runs in the background mode (using &) the program hangs at the process.waitFor() call, when I move the program to the foreground (using fg) it resumes work correctly !!!
Can any one tell me what might be going on?!!!
Thank you all in advance.

There is program-wide redirection for stdout and stderr to log the output to a log file and JTextPane, but nothing for stdin.

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    Hmmm as far as i know the Process created by Runtime.getRuntime.exec(String ex), runs independantly of the creator. And that is also what i get from reading the Process API, espacially this part "The subprocess is not killed when there are no more references to the Process object, but rather the subprocess continues executing asynchronously":
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