Since downloading 11.0.1 (12), Itunes can't locate or play many songs but the same songs still play on my synched iPod.

Since downloading Itunes 11.0.1 (12), Itunes can't locate or play many songs but the same songs still play on my synched iPod. I have a MacBook Air, Lion OS, Itunes version 11.0.1 (12).  I didn't see this problem with older versions of Itunes.  I do not manually change the organization of the Itunes library.  I use the Itunes "add to library" feature or Amazon's MP3 downloader.  Sometimes, however, I have changed song information in the "info" window.  Such as unchecking the "compilation" button and sorting by artist (for that song), so that I can search by artist in the top pane of Itunes (otherwise the song is sorted in an album that is a "compilation," but not under the name of the artist who sang a particular song.  I've done this without problem in the past, but perhaps the newer version of Itunes can't handle the changes I made and has lost track of where the older version of Itunes stored such songs?    How do I fix all these older previously ok changes if that's the case...  If I could just find where they are stored in Itunes it would be easier perhaps.  I've looked in compilations, unknown artist, and so forth to no avail.  And Finder search can't find them.
Details: suddenly, many songs are marked with "!," denoting that Itunes cannot find the songs in the library and cannot play them. Oddly, my iPod CAN play the "unlocatable" songs with no problem (it has been synched "post problem").  So the songs are still there somewhere in the Itunes library.  This problem occurs by album, that is, all songs from the same album become unlocatable, although different albums by the same artist may still be found and played. 
Exploring the Itunes library to try to locate the missing albums/songs, I discovered that generally there is no longer any folder specified for any artist associated with a missing album [artist is the top level of organization and album is the second; compilations are in the same folder]. This is true even if I have other albums from the same artist which Itunes IS able to locate.  I cannot find a single song/album by such artists anywhere in the Itunes file system, even the ones that Itunes can still play.  If I right click and "get info" for an unlocatable song, I get a notification box that asks if I want to locate the file.  If I click "no," next thing-- the info window for the song pops up, with all the correct info (including sort info, which I double check)!  Why is Itunes able to locate all the info on the song, but is not able to play the MP3 file? 
Using Finder I cannot locate the songs that are unlocatable by Itunes (except the original download files in the Amazon MP3 folder).  Finder is, of course, able to find Itunes songs that Itunes has no trouble locating.  What's up?!  My iPod can find them just fine.  I just synched my iPod again and am playing the "unlocatable" songs right now.
I can "fix" most of these files by downloading files one by one into Itunes from my Amazon download folder or from my CDs using the "add to library" feature. In fact, it is strange.  But this will take a very long time!  And what if this problem continues recurring?   But something strange happens when I implement this fix.  I added one song to Itunes (from the Amazon MP3 folder, using "add to library") for one "unlocatable" album of Pete Seegers. After adding that one song, I looked at the Itunes music library and discovered that a folder for Pete Seeger (which was not there before I added the song) had been newly created, or restored.  In this folder was the one song I had just added, but ALSO all my other Seeger albums that had previously remained "locatable" by Itunes.  But the other "unlocatable" songs were not restored, unfortunately.  

I have found a workaround. When I create a new playlist, iTunes allows me to add or remove songs from existing playlists for a short while. Then, for some reason it prevents me from adding and deleting songs again. Not sure why. Go figure.

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