Table got re-created with 0 entries

Hello All,
                 In ECC system after refresh BDLS is taking too long time(24hrs to 36hrs) becase of that as per SDN blogs to improve BDLS performance i build the index on few tables mentioned below using SE11 & SE14 t-codes, after completing BDLS I dropped those indexes while dropping BKPF table got re created with 0 entries but other tables are having entries. i have followed sam eprocess for all the tables, after that i tried in sandbox system that system also while dropping BKPF got re-created with ' 0 'entries ,Could you please let me know why it has re-created with 0 entries.
BKPF   
CE11000 
COBK   
COEP   
COES  
COFIS  
GLPCA  
GLPCP   
GLPCT   
MKPF   
SRRELROLES

Thanks for the Prompt response,
The service entry was created this month
I did try by checking the "Deliv. Compl." indicator on the PO and then tried to reverse the service entry but I get the same error i.e SE541
Thanks

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